diff options
| -rw-r--r-- | sci-libs/blas-atlas/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-libs/blas-atlas/blas-atlas-3.9.23-r1.ebuild | 256 | ||||
| -rw-r--r-- | sci-libs/blas-atlas/files/blas-atlas-3.9.3-darwin-make-top.patch | 110 |
3 files changed, 375 insertions, 1 deletions
diff --git a/sci-libs/blas-atlas/ChangeLog b/sci-libs/blas-atlas/ChangeLog index 381c91bf9540..420183e23a26 100644 --- a/sci-libs/blas-atlas/ChangeLog +++ b/sci-libs/blas-atlas/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for sci-libs/blas-atlas # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-libs/blas-atlas/ChangeLog,v 1.97 2010/02/19 02:35:21 markusle Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-libs/blas-atlas/ChangeLog,v 1.98 2010/03/07 16:56:06 jlec Exp $ + +*blas-atlas-3.9.23-r1 (07 Mar 2010) + + 07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org> + +files/blas-atlas-3.9.3-darwin-make-top.patch, + +blas-atlas-3.9.23-r1.ebuild: + Moved to EAPI=3 for PREFIX support, imported prefix patches from overlay, + removed epause *blas-atlas-3.9.23 (18 Feb 2010) diff --git a/sci-libs/blas-atlas/blas-atlas-3.9.23-r1.ebuild b/sci-libs/blas-atlas/blas-atlas-3.9.23-r1.ebuild new file mode 100644 index 000000000000..101b325a8aab --- /dev/null +++ b/sci-libs/blas-atlas/blas-atlas-3.9.23-r1.ebuild @@ -0,0 +1,256 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-libs/blas-atlas/blas-atlas-3.9.23-r1.ebuild,v 1.1 2010/03/07 16:56:06 jlec Exp $ + +EAPI="3" + +inherit eutils toolchain-funcs fortran multilib + +DESCRIPTION="Automatically Tuned Linear Algebra Software BLAS implementation" +HOMEPAGE="http://math-atlas.sourceforge.net/" +MY_PN=${PN/blas-/} +PATCH_V="3.9.21" +SRC_URI="mirror://sourceforge/math-atlas/${MY_PN}${PV}.tar.bz2 + mirror://gentoo/${MY_PN}-${PATCH_V}-shared-libs.2.patch.bz2" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x86-macos" +IUSE="doc" + +RDEPEND="app-admin/eselect-blas + app-admin/eselect-cblas + doc? ( app-doc/blas-docs )" +DEPEND="app-admin/eselect-blas + app-admin/eselect-cblas + >=sys-devel/libtool-1.5" + +S="${WORKDIR}/ATLAS" +BLD_DIR="${S}"/gentoo-build + +pkg_setup() { + # icc won't compile (as of icc-10.0.026) + # and will blow out $PORTAGE_TMPDIR + if [[ $(tc-getCC) = icc* ]]; then + eerror "icc compiler is not supported with sci-libs/blas-atlas" + die "blas-atlas won't compile with icc" + fi + + FORTRAN="g77 gfortran ifc" + fortran_pkg_setup + echo + ewarn "Please make sure to disable CPU throttling completely" + ewarn "during the compile of blas-atlas. Otherwise, all atlas" + ewarn "generated timings will be completely random and the" + ewarn "performance of the resulting libraries will be degraded" + ewarn "considerably." + echo + ewarn "For users of <=gcc-4.1 only:" + ewarn "If you experience failing SANITY tests during" + ewarn "atlas' compile please try passing -mfpmath=387; this" + ewarn "option might also result in much better performance" + ewarn "than using then sse instruction set depending on your" + ewarn "CPU." + echo + ewarn "If blas-atlas fails during linking with a message" + ewarn "'relocation R_X86_64_32 .... recompile with -fPIC.'" + ewarn "please re-emerge libtool and then try again." + echo +} + +src_prepare() { + epatch "${DISTDIR}"/${MY_PN}-${PATCH_V}-shared-libs.2.patch.bz2 + epatch "${FILESDIR}"/${MY_PN}-${PV}-ger-fix.patch + epatch "${FILESDIR}"/${MY_PN}-asm-gentoo.patch + + cp "${FILESDIR}"/eselect.{,c}blas.{,threaded-}atlas "${T}"/ + sed -i -e "s:/usr:${EPREFIX}/usr:" \ + "${T}"/eselect.{,c}blas.{,threaded-}atlas || die + if [[ ${CHOST} == *-darwin* ]] ; then + sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ + "${T}"/eselect.{,c}blas.{,threaded-}atlas || die + sed -e /LIBTOOL/s/libtool/glibtool/ -i CONFIG/src/SpewMakeInc.c + epatch "${FILESDIR}"/${PN}-3.9.3-darwin-make-top.patch + fi + + mkdir "${BLD_DIR}" || die "failed to generate build directory" + cd "${BLD_DIR}" + cp "${FILESDIR}"/war . && chmod a+x war || die "failed to install war" + sed -i -e '1c\#! '"${EPREFIX}"'/bin/bash' \ + -e '/^\$ARCHIVER \$@$/i\shift' war +} + +src_configure() { + cd "${BLD_DIR}" + local archselect= + if use amd64 || use ppc64; then + archselect="-b 64" + elif use alpha; then + archselect="" + else + archselect="-b 32" + fi + + # Remove -m64 on alpha, since the compiler doesn't support it + use alpha && sed -i -e 's/-m64//g' "${S}"/CONFIG/src/probe_comp.c + + # unfortunately, atlas-3.9.0 chokes when passed + # x86_64-pc-linux-gnu-gcc and friends instead of + # plain gcc. Hence, we'll have to workaround this + # until it is fixed by upstream + local c_compiler=$(tc-getCC) + if [[ "${c_compiler}" == *gcc* ]]; then + c_compiler="gcc" + fi + + ../configure \ + --cc="${c_compiler}" \ + --cflags="${CFLAGS}" \ + --prefix="${ED}/${DESTTREE}" \ + --libdir="${ED}/${DESTTREE}"/$(get_libdir)/atlas \ + --incdir="${ED}/${DESTTREE}"/include \ + -C ac "${c_compiler}" -F ac "${CFLAGS}" \ + -C if ${FORTRANC} -F if "${FFLAGS:-'-O2'}" \ + -Ss pmake "\$(MAKE) ${MAKEOPTS}" \ + -Si cputhrchk 0 ${archselect} \ + || die "configure failed" + + # fix LDFLAGS + sed -e "s|LDFLAGS =.*|LDFLAGS = ${LDFLAGS}|" \ + -i "${BLD_DIR}"/Make.inc +} + +src_compile() { + cd "${BLD_DIR}" + + # atlas does its own parallel builds + # â and it fails parallel make, bug #294172 + emake -j1 || die "emake failed" + + RPATH="${DESTTREE}"/$(get_libdir)/blas + emake -j1 \ + LIBDIR=$(get_libdir) \ + RPATH="${RPATH}"/atlas \ + shared || die "failed to build shared libraries" + + # build shared libraries of threaded libraries if applicable + if [[ -d gentoo/libptcblas.a ]]; then + emake -j1 \ + LIBDIR=$(get_libdir) \ + RPATH="${RPATH}"/threaded-atlas \ + ptshared || die "failed to build threaded shared libraries" + fi +} + +src_test() { + # make check does not work because + # we don't build lapack libs + for i in F77 C; do + einfo "Testing ${i} interface" + cd "${BLD_DIR}"/interfaces/blas/${i}/testing + make sanity_test || die "emake tests for ${i} failed" + if [[ -d "${BLD_DIR}"/gentoo/libptf77blas.a ]]; then + make ptsanity_test || die "emake tests threaded for ${i}failed" + fi + done + echo "Timing ATLAS" + cd "${BLD_DIR}" + emake time || die "emake time failed" +} + +src_install () { + dodir "${RPATH}"/atlas + cd "${BLD_DIR}"/gentoo/libs + cp -P libatlas* "${ED}/${DESTTREE}"/$(get_libdir) \ + || die "Failed to install libatlas" + + # pkgconfig files + local extlibs="-lm" + local threadlibs + [[ ${FORTRANC} == gfortran ]] && extlibs="${extlibs} -lgfortran" + [[ ${FORTRANC} == g77 ]] && extlibs="${extlibs} -lg2c" + cp "${FILESDIR}"/blas.pc.in blas.pc + cp "${FILESDIR}"/cblas.pc.in cblas.pc + sed -i \ + -e "s:=/usr:=${EPREFIX}/usr:" \ + -e "s:@LIBDIR@:$(get_libdir)/blas/atlas:" \ + -e "s:@PV@:${PV}:" \ + -e "s:@EXTLIBS@:${extlibs}:g" \ + -e "s:@THREADLIBS@:${threadlibs}:g" \ + *blas.pc || die "sed *blas.pc failed" + + cp -P *blas* "${ED}/${RPATH}"/atlas \ + || die "Failed to install blas/cblas" + + ESELECT_PROF=atlas + eselect blas add $(get_libdir) "${T}"/eselect.blas.atlas ${ESELECT_PROF} + eselect cblas add $(get_libdir) "${T}"/eselect.cblas.atlas ${ESELECT_PROF} + + if [[ -d "${BLD_DIR}"/gentoo/threaded-libs ]]; then + dodir "${RPATH}"/threaded-atlas + cd "${BLD_DIR}"/gentoo/threaded-libs + + # pkgconfig files + cp "${FILESDIR}"/blas.pc.in blas.pc + cp "${FILESDIR}"/cblas.pc.in cblas.pc + threadlibs="-lpthread" + sed -i \ + -e "s:=/usr:=${EPREFIX}/usr:" \ + -e "s:@LIBDIR@:$(get_libdir)/blas/threaded-atlas:" \ + -e "s:@PV@:${PV}:" \ + -e "s:@EXTLIBS@:${extlibs}:g" \ + -e "s:@THREADLIBS@:${threadlibs}:g" \ + *blas.pc || die "sed *blas.pc failed" + + cp -P * "${ED}/${RPATH}"/threaded-atlas \ + || die "Failed to install threaded atlas" + ESELECT_PROF=atlas-threads + + eselect blas add $(get_libdir) "${T}"/eselect.blas.threaded-atlas ${ESELECT_PROF} + eselect cblas add $(get_libdir) "${T}"/eselect.cblas.threaded-atlas ${ESELECT_PROF} + fi + + insinto "${DESTTREE}"/include/atlas + doins \ + "${S}"/include/cblas.h \ + "${S}"/include/atlas_misc.h \ + "${S}"/include/atlas_enum.h \ + "${S}"/include/atlas_aux.h \ + || die "failed to install headers" + + # These headers contain the architecture-specific + # optimizations determined by ATLAS. The atlas-lapack build + # is much shorter if they are available, so save them: + doins "${BLD_DIR}"/include/*.h \ + || die "failed to install timing headers" + + # some docs + cd "${S}"/doc + dodoc INDEX.txt AtlasCredits.txt ChangeLog || die "dodoc failed" + # atlas specific doc (blas generic docs installed by blas-docs) + if use doc; then + insinto /usr/share/doc/${PF} + doins atlas*pdf cblasqref.pdf || die "doins docs failed" + fi +} + +pkg_postinst() { + for p in blas cblas; do + local current_p=$(eselect ${p} show | cut -d' ' -f2) + # this snippet works around the eselect bug #189942 and makes + # sure that users upgrading from a previous blas-atlas + # version pick up the new pkg-config files + if [[ ${current_p} == ${ESELECT_PROF} \ + || ${current_p} == "threaded-atlas" \ + || -z ${current_p} ]]; then + local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config + [[ -e ${configfile} ]] && rm -f ${configfile} + eselect ${p} set ${ESELECT_PROF} + elog "${p} has been eselected to ${ESELECT_PROF}" + else + elog "Current eselected ${p} is ${current_p}" + elog "To use the ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" + elog "\t eselect ${p} set ${ESELECT_PROF}" + fi + done +} diff --git a/sci-libs/blas-atlas/files/blas-atlas-3.9.3-darwin-make-top.patch b/sci-libs/blas-atlas/files/blas-atlas-3.9.3-darwin-make-top.patch new file mode 100644 index 000000000000..0b32a6fc41b8 --- /dev/null +++ b/sci-libs/blas-atlas/files/blas-atlas-3.9.3-darwin-make-top.patch @@ -0,0 +1,110 @@ +http://bugs.gentoo.org/211712 + +--- Make.top ++++ Make.top +@@ -27,70 +27,70 @@ + + + shared: INSTALLER = cp +-shared: libatlas.so libblas.so libcblas.so ++shared: libatlas.dylib libblas.dylib libcblas.dylib + + shared-strip: INSTALLER = install -s +-shared-strip: libatlas.so libblas.so libcblas.so ++shared-strip: libatlas.dylib libblas.dylib libcblas.dylib + + ptshared: INSTALLER = cp +-ptshared: libptblas.so libptcblas.so ++ptshared: libptblas.dylib libptcblas.dylib + + ptshared-strip: INSTALLER = install -s +-ptshared-strip: libptblas.so libptcblas.so ++ptshared-strip: libptblas.dylib libptcblas.dylib + +-libatlas.so: ++libatlas.dylib: + mkdir -p gentoo/libs + @echo + @echo Linking a really big library, please be patient... + @echo + cd gentoo/libatlas.a ; \ +- libtool --mode=link --tag=CC $(CC) $(LDFLAGS) $(LIBS) -o libatlas.la \ +- *.lo -rpath /usr/$(LIBDIR) ; \ +- libtool --mode=install $(INSTALLER) libatlas.la $(BLDdir)/gentoo/libs ++ glibtool --mode=link --tag=CC $(CC) $(LDFLAGS) $(LIBS) -o libatlas.la \ ++ *.lo -rpath $(RPATH) ; \ ++ glibtool --mode=install $(INSTALLER) libatlas.la $(BLDdir)/gentoo/libs + +-libblas.so: ++libblas.dylib: + cd gentoo/libf77blas.a ; \ +- libtool --mode=link --tag=CC $(CC) $(LDFLAGS) $(F77SYSLIB) -o libblas.la \ ++ glibtool --mode=link --tag=CC $(CC) $(LDFLAGS) $(F77SYSLIB) -o libblas.la \ + ../libs/libatlas.la *.lo -rpath $(RPATH); \ +- rm -f .libs/libblas.so.0.0.0; \ +- $(CC) -shared $(LDFLAGS) .libs/*.o $(F77SYSLIB) $(BLDdir)/gentoo/libs/libatlas.so \ +- -Wl,-soname -Wl,libblas.so.0 -o .libs/libblas.so.0.0.0; \ +- libtool --mode=install $(INSTALLER) libblas.la $(BLDdir)/gentoo/libs ++ rm -f .libs/libblas.0.0.0.dylib; \ ++ $(CC) -dynamiclib $(LDFLAGS) .libs/*.o $(F77SYSLIB) $(BLDdir)/gentoo/libs/libatlas.dylib \ ++ -install_name $(RPATH)/libblas.0.dylib -o .libs/libblas.0.0.0.dylib; \ ++ glibtool --mode=install $(INSTALLER) libblas.la $(BLDdir)/gentoo/libs + +-libcblas.so: ++libcblas.dylib: + cd gentoo/libcblas.a ; \ +- libtool --mode=link --tag=CC $(CC) $(LDFLAGS) -o libcblas.la \ ++ glibtool --mode=link --tag=CC $(CC) $(LDFLAGS) -o libcblas.la \ + ../libs/libatlas.la *.lo -rpath $(RPATH) ; \ +- rm -f .libs/libcblas.so.0.0.0; \ +- $(CC) -shared $(LDFLAGS) .libs/*.o $(BLDdir)/gentoo/libs/libatlas.so \ +- -Wl,-soname -Wl,libcblas.so.0 -o .libs/libcblas.so.0.0.0; \ +- libtool --mode=install $(INSTALLER) libcblas.la $(BLDdir)/gentoo/libs ++ rm -f .libs/libcblas.0.0.0.dylib; \ ++ $(CC) -dynamiclib $(LDFLAGS) .libs/*.o $(BLDdir)/gentoo/libs/libatlas.dylib \ ++ -install_name $(RPATH)/libcblas.0.dylib -o .libs/libcblas.0.0.0.dylib; \ ++ glibtool --mode=install $(INSTALLER) libcblas.la $(BLDdir)/gentoo/libs + +-libptblas.so: ++libptblas.dylib: + mkdir -p gentoo/threaded-libs + cd gentoo/libptf77blas.a ; \ +- libtool --mode=link --tag=CC $(CC) $(LDFLAGS) $(F77SYSLIB) -o libblas.la \ ++ glibtool --mode=link --tag=CC $(CC) $(LDFLAGS) $(F77SYSLIB) -o libblas.la \ + ../libs/libatlas.la *.lo -rpath $(RPATH); \ +- rm -f .libs/libblas.so.0.0.0; \ +- $(CC) -shared $(LDFLAGS) .libs/*.o $(F77SYSLIB) $(BLDdir)/gentoo/libs/libatlas.so \ +- -Wl,-soname -Wl,libblas.so.0 -o .libs/libblas.so.0.0.0; \ +- libtool --mode=install $(INSTALLER) libblas.la $(BLDdir)/gentoo/threaded-libs ++ rm -f .libs/libblas.0.0.0.dylib; \ ++ $(CC) -dynamiclib $(LDFLAGS) .libs/*.o $(F77SYSLIB) $(BLDdir)/gentoo/libs/libatlas.dylib \ ++ -install_name $(RPATH)/libblas.0.dylib -o .libs/libblas.0.0.0.dylib; \ ++ glibtool --mode=install $(INSTALLER) libblas.la $(BLDdir)/gentoo/threaded-libs + +-libptcblas.so: ++libptcblas.dylib: + cd gentoo/libptcblas.a ; \ +- libtool --mode=link --tag=CC $(CC) $(LDFLAGS) -o libcblas.la \ ++ glibtool --mode=link --tag=CC $(CC) $(LDFLAGS) -o libcblas.la \ + ../libs/libatlas.la *.lo -rpath $(RPATH); \ +- rm -f .libs/libcblas.so.0.0.0; \ +- $(CC) -shared $(LDFLAGS) .libs/*.o $(BLDdir)/gentoo/libs/libatlas.so \ +- -Wl,-soname -Wl,libcblas.so.0 -o .libs/libcblas.so.0.0.0; \ +- libtool --mode=install $(INSTALLER) libcblas.la $(BLDdir)/gentoo/threaded-libs ++ rm -f .libs/libcblas.0.0.0.dylib; \ ++ $(CC) -dynamiclib $(LDFLAGS) .libs/*.o $(BLDdir)/gentoo/libs/libatlas.dylib \ ++ -install_name $(RPATH)/libcblas.0.dylib -o .libs/libcblas.0.0.0.dylib; \ ++ glibtool --mode=install $(INSTALLER) libcblas.la $(BLDdir)/gentoo/threaded-libs + +-liblapack.so: ++liblapack.dylib: + mkdir -p gentoo/libs + cd gentoo/liblapack.a ; \ +- libtool --mode=link --tag=CC $(CC) $(LDFLAGS) $(F77SYSLIB) -o liblapack.la \ ++ glibtool --mode=link --tag=CC $(CC) $(LDFLAGS) $(F77SYSLIB) -o liblapack.la \ + *.lo -rpath $(RPATH) -lblas -lcblas -latlas ; \ +- libtool --mode=install $(INSTALLER) liblapack.la $(BLDdir)/gentoo/libs ++ glibtool --mode=install $(INSTALLER) liblapack.la $(BLDdir)/gentoo/libs + + + sanity_test : |