diff options
| -rw-r--r-- | sci-biology/t-coffee/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/t-coffee/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/t-coffee/files/digest-t-coffee-2.26 | 1 | ||||
| -rw-r--r-- | sci-biology/t-coffee/t-coffee-2.26.ebuild | 55 |
4 files changed, 64 insertions, 1 deletions
diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog index c8a908e8572a..ffdad293981d 100644 --- a/sci-biology/t-coffee/ChangeLog +++ b/sci-biology/t-coffee/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/t-coffee # Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.1 2005/03/03 18:41:31 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.2 2005/03/30 21:11:46 ribosome Exp $ + +*t-coffee-2.26 (30 Mar 2005) + + 30 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +t-coffee-2.26.ebuild: + New version. *t-coffee-2.03 (03 Mar 2005) diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest index d1640782d1a9..f9f001234129 100644 --- a/sci-biology/t-coffee/Manifest +++ b/sci-biology/t-coffee/Manifest @@ -1,4 +1,6 @@ +MD5 08cd67c8d44ba7e2d330185b9fca91be t-coffee-2.26.ebuild 1352 MD5 ba7eb142bfd24a0004f65c04bae8025e t-coffee-2.03.ebuild 1516 MD5 72c8c9734d7d1d9d59c1be0f97d1d759 ChangeLog 357 MD5 0bbfd32ca9864625c55ab6460dbbd963 metadata.xml 755 MD5 733ccc786341ddaabbed48391bcdb961 files/digest-t-coffee-2.03 86 +MD5 746d3921012d17495ab81da3878a076d files/digest-t-coffee-2.26 86 diff --git a/sci-biology/t-coffee/files/digest-t-coffee-2.26 b/sci-biology/t-coffee/files/digest-t-coffee-2.26 new file mode 100644 index 000000000000..84315b952543 --- /dev/null +++ b/sci-biology/t-coffee/files/digest-t-coffee-2.26 @@ -0,0 +1 @@ +MD5 7e345f8410d921075492dd9853331e44 T-COFFEE_distribution_Version_2.26.tar.gz 901469 diff --git a/sci-biology/t-coffee/t-coffee-2.26.ebuild b/sci-biology/t-coffee/t-coffee-2.26.ebuild new file mode 100644 index 000000000000..27d2c81e8a00 --- /dev/null +++ b/sci-biology/t-coffee/t-coffee-2.26.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-2.26.ebuild,v 1.1 2005/03/30 21:11:46 ribosome Exp $ + +inherit toolchain-funcs + +DESCRIPTION="A multiple sequence alignment package" +HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html" +SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz" +LICENSE="t-coffee" + +RESTRICT="nomirror" + +SLOT="0" +IUSE="" +KEYWORDS="~x86" + +DEPEND="sci-biology/clustalw" + +TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}" +S=${TCDIR}/t_coffee_source + +src_unpack(){ + unpack ${A} + cd ${S} + sed -i -e "s/CC = cc/CC = $(tc-getCC) ${CFLAGS}/" makefile || die || die + cd ${TCDIR}/bin + sed -i -e 's%chdir "./example/test";%chdir "../example/test";%' test.pl || die + +} + +src_compile() { + make all || die +} + +src_install() { + cd ${TCDIR}/bin + dobin t_coffee + insinto /usr/share/${PN}/lib + doins ${TCDIR}/html + + dodoc ${TCDIR}/doc/README4T-COFFEE + insinto /usr/share/doc/${PF} + doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf} + + insinto /usr/share/${PN}/example/seq + doins ${TCDIR}/example/seq/* + insinto /usr/share/${PN}/example/test + doins ${TCDIR}/example/test/*.{aln,pep} +} + +src_test() { + cd ${TCDIR}/bin + ./test.pl || die +} |