diff options
| -rw-r--r-- | sci-libs/clipper/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-libs/clipper/clipper-2.1_p100511-r1.ebuild | 58 | ||||
| -rw-r--r-- | sci-libs/clipper/files/2.1_p100511-makefile.patch | 23 | ||||
| -rw-r--r-- | sci-libs/clipper/files/clipper-2.1_p100511-outofsourcebuild.patch | 16 | ||||
| -rw-r--r-- | sci-libs/clipper/metadata.xml | 2 |
5 files changed, 107 insertions, 3 deletions
diff --git a/sci-libs/clipper/ChangeLog b/sci-libs/clipper/ChangeLog index 8710558d85e7..66383ab5c22b 100644 --- a/sci-libs/clipper/ChangeLog +++ b/sci-libs/clipper/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-libs/clipper -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-libs/clipper/ChangeLog,v 1.21 2012/07/10 18:55:01 jlec Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-libs/clipper/ChangeLog,v 1.22 2013/05/28 18:15:50 jlec Exp $ + +*clipper-2.1_p100511-r1 (28 May 2013) + + 28 May 2013; Justin Lecher <jlec@gentoo.org> +clipper-2.1_p100511-r1.ebuild, + +files/2.1_p100511-makefile.patch, + +files/clipper-2.1_p100511-outofsourcebuild.patch, metadata.xml: + Rename for new version schema 10 Jul 2012; Justin Lecher <jlec@gentoo.org> -clipper-20100511.ebuild: Cleaned old diff --git a/sci-libs/clipper/clipper-2.1_p100511-r1.ebuild b/sci-libs/clipper/clipper-2.1_p100511-r1.ebuild new file mode 100644 index 000000000000..90689594bf8a --- /dev/null +++ b/sci-libs/clipper/clipper-2.1_p100511-r1.ebuild @@ -0,0 +1,58 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-libs/clipper/clipper-2.1_p100511-r1.ebuild,v 1.1 2013/05/28 18:15:50 jlec Exp $ + +EAPI=4 + +AUTOTOOLS_AUTORECONF=true + +inherit autotools-utils eutils flag-o-matic + +MY_PV=${PV/_p/-} +MY_P="${PN}-${MY_PV}" + +DESCRIPTION="Object-oriented libraries for crystallographic data and crystallographic computation" +HOMEPAGE="http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html" +SRC_URI="http://www.ysbl.york.ac.uk/~cowtan/clipper/${MY_P}-ac.tar.gz" + +LICENSE="LGPL-2.1" +SLOT="0" +KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux" +IUSE="debug static-libs" + +RDEPEND=" + sci-libs/ccp4-libs + sci-libs/fftw + sci-libs/mmdb" +DEPEND="${RDEPEND}" + +S="${WORKDIR}"/${PN}-2.1 + +PATCHES=( + "${FILESDIR}"/20091215-missing-var.patch + "${FILESDIR}"/${PV}-makefile.patch + "${FILESDIR}"/${P}-outofsourcebuild.patch + ) + +src_configure() { + # Recommended on ccp4bb/coot ML to fix crashes when calculating maps + # on 64-bit systems + append-flags -fno-strict-aliasing + + local myeconfargs=( + --enable-ccp4 + --enable-cif + --enable-cns + --enable-contrib + --enable-minimol + --enable-mmdb + --enable-phs + --with-mmdb="${EPREFIX}/usr" + $(use_enable debug) + ) + autotools-utils_src_configure +} + +src_test() { + emake -C "${AUTOTOOLS_BUILD_DIR}"/examples check +} diff --git a/sci-libs/clipper/files/2.1_p100511-makefile.patch b/sci-libs/clipper/files/2.1_p100511-makefile.patch new file mode 100644 index 000000000000..d933e88f7c7e --- /dev/null +++ b/sci-libs/clipper/files/2.1_p100511-makefile.patch @@ -0,0 +1,23 @@ + Makefile.am | 6 +++--- + 1 files changed, 3 insertions(+), 3 deletions(-) + +diff --git a/Makefile.am b/Makefile.am +index 745824d..0da0ddd 100644 +--- a/Makefile.am ++++ b/Makefile.am +@@ -1,12 +1,12 @@ + # -*- mode: Makefile; mode: font-lock -*- + AUTOMAKE_OPTIONS = foreign +-SUBDIRS = config clipper examples dox +-DIST_SUBDIRS = config clipper examples dox ++SUBDIRS = config clipper dox ++DIST_SUBDIRS = config clipper dox + EXTRA_DIST = AUTHORS COPYING ChangeLog INSTALL NEWS README + bin_SCRIPTS = clipper-config + # pkgconfigdir = $(libdir)/pkgconfig + # pkgconfig_DATA = clipper.pc + if DEBUG +-AM_CXXFLAGS = -g -DDEBUG ++AM_CXXFLAGS = -DDEBUG + endif + ACLOCAL_AMFLAGS = -I config diff --git a/sci-libs/clipper/files/clipper-2.1_p100511-outofsourcebuild.patch b/sci-libs/clipper/files/clipper-2.1_p100511-outofsourcebuild.patch new file mode 100644 index 000000000000..2db566b7b799 --- /dev/null +++ b/sci-libs/clipper/files/clipper-2.1_p100511-outofsourcebuild.patch @@ -0,0 +1,16 @@ + examples/Makefile.am | 2 +- + 1 files changed, 1 insertions(+), 1 deletions(-) + +diff --git a/examples/Makefile.am b/examples/Makefile.am +index 203ce96..2b65f1c 100644 +--- a/examples/Makefile.am ++++ b/examples/Makefile.am +@@ -27,7 +27,7 @@ maketestdata_SOURCES = maketestdata.cpp + + TESTS = maketestdata + +-INCLUDES = -I.. $(FFTW_CXXFLAGS) $(MMDB_CXXFLAGS) $(CCP4_CXXFLAGS) $(CCTBX_CXXFLAGS) $(BOOST_CXXFLAGS) ++INCLUDES = -I$(top_srcdir) $(FFTW_CXXFLAGS) $(MMDB_CXXFLAGS) $(CCP4_CXXFLAGS) $(CCTBX_CXXFLAGS) $(BOOST_CXXFLAGS) + + LIBS = $(FFTW_LIBS) $(CCP4_LIBS) $(MMDB_LIBS) $(CCTBX_LIBS) + diff --git a/sci-libs/clipper/metadata.xml b/sci-libs/clipper/metadata.xml index e42d0af60f42..51fdedab1b38 100644 --- a/sci-libs/clipper/metadata.xml +++ b/sci-libs/clipper/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <herd>sci-chemistry</herd> + <herd>sci-chemistry</herd> </pkgmetadata> |