diff options
| -rw-r--r-- | sci-chemistry/nmrpipe/Manifest | 40 | ||||
| -rw-r--r-- | sci-chemistry/nmrpipe/files/digest-nmrpipe-2.3.2005.167.14.44 | 10 | ||||
| -rw-r--r-- | sci-chemistry/nmrpipe/nmrpipe-2.3.2005.167.14.44.ebuild | 136 |
3 files changed, 19 insertions, 167 deletions
diff --git a/sci-chemistry/nmrpipe/Manifest b/sci-chemistry/nmrpipe/Manifest index 8bce679cf556..b6de58febdca 100644 --- a/sci-chemistry/nmrpipe/Manifest +++ b/sci-chemistry/nmrpipe/Manifest @@ -2,28 +2,26 @@ AUX env-nmrpipe 499 RMD160 11ab9f42b03700caedfe344186c47fd4a6409758 SHA1 8431685 MD5 29c1ecf7eda6ce5cb66a3cc7eafc00f1 files/env-nmrpipe 499 RMD160 11ab9f42b03700caedfe344186c47fd4a6409758 files/env-nmrpipe 499 SHA256 f16820dd88ae38c8db6ffed19a97aade62f0de4c3de692b7a2c3b89897d894e2 files/env-nmrpipe 499 -DIST acme.tar.Z 11681951 -DIST binval.com 3209 -DIST dyn.tar.Z 37506563 -DIST install.com 20812 -DIST mfr.tar.Z 829580 -DIST nmrpipe.linux9.tar.Z 22505078 -DIST pdbH.tar.Z 75004655 -DIST valpha.tar 490800640 -DIST xview.linux9.tar.Z 4047400 -DIST xview_fonts.tar.Z 2183991 -EBUILD nmrpipe-2.3.2005.167.14.44.ebuild 4677 RMD160 77daff7d0052476d3dcff0a3812cd04b0658d9e7 SHA1 9c83a480b521e0d70036f31d36827d930dd07f4e SHA256 332386817824b14c1819f35dbb895ede5e18afc23babe75b30e02d98e69c1570 -MD5 2e31d954de7cb3c3697001990ffa1898 nmrpipe-2.3.2005.167.14.44.ebuild 4677 -RMD160 77daff7d0052476d3dcff0a3812cd04b0658d9e7 nmrpipe-2.3.2005.167.14.44.ebuild 4677 -SHA256 332386817824b14c1819f35dbb895ede5e18afc23babe75b30e02d98e69c1570 nmrpipe-2.3.2005.167.14.44.ebuild 4677 -MISC ChangeLog 1894 RMD160 39f9b3a1453328860446f9ab84c1088257bdd148 SHA1 670d5fa881965f894772c9b9e651cadf9bb9c66f SHA256 e8ae050b68c3735d906352d8a639fef9147f5bf07cfaf6a894250fefc7ec5a93 -MD5 f0ba1c6f3fb5d0fe847f1fb1ac17ed1e ChangeLog 1894 -RMD160 39f9b3a1453328860446f9ab84c1088257bdd148 ChangeLog 1894 -SHA256 e8ae050b68c3735d906352d8a639fef9147f5bf07cfaf6a894250fefc7ec5a93 ChangeLog 1894 +DIST acme.tar.Z 11681951 RMD160 fdcf35fab1b63ddda55288b1b2ed0f82c8299bef SHA1 5093f92a4d7e4173bc056b6b1922a6da8e6bbf0c SHA256 5713452a1461e636f0de48e5ce3476fc0ae60b3f78a0288744f45e455f3445d9 +DIST binval.com 3210 RMD160 9cfa8c837aad976c97b689b745950cb2aa020938 SHA1 6d1efa854e0e96a037ed9359aca635665405803b SHA256 f0d541a727e98618b3ffc1c6045c43a689d1b133869046cce40fecab2f00edfa +DIST dyn.tar.Z 37424311 RMD160 b5004d623a0be7c89fbc97347df85b421c27626d SHA1 a439cbb944e60876988fec157f0cfbc1c9db6114 SHA256 87f068d6c67c5c94fd39bb0561bfb1b5f77e5e1c24409edc934d7f083403b4b8 +DIST install.com 21431 RMD160 9b8ac9106577408e5637f3f0fa32cad6fdf0cf2a SHA1 4880828e9e528fbb256c74bc5f54cc7e49e7c74d SHA256 24bdba38392b29ca2c3601e83dc70b563377017dd591e2f50256c1442ed11c94 +DIST mfr.tar.Z 899961 RMD160 0c6f4ca5b63a894291b5185872fdecf96b5980f0 SHA1 efec09275d74fb3a851fd608fe26a51f1277da19 SHA256 90efc5c7ba219aee54259a730709a925ad7be6c52cf75a7944a8ab0b3bda5001 +DIST nmrpipe.linux9.tar.Z 22155253 RMD160 689047923b0199f480cf03cee0cb9bb3cb65655f SHA1 e6bcfcfaa93be7e3867122f43b0ef83eaecf48ad SHA256 5e8accb37ec00b1ead2f718c26978101c82ece394cc08a72687fa836cfc4b544 +DIST pdbH.tar.Z 75004655 RMD160 c0152166dfda441a8a1519eaca4bcdf998ae0cfb SHA1 12c010027962dae78a6a38c14154673434299085 SHA256 b00458696d3b90de76c382f449d18a6b6affca6cb51dd66434c9848dc8a920d5 +DIST valpha.tar 490800640 RMD160 da5779f72680ccc8b88bde8c485db26665970423 SHA1 5583e3c435496251750b464a737755c1f8d055cd SHA256 6072ac73245404d5810bef9300d76328585fcfb4bce9d517815624bcc0a9634c +EBUILD nmrpipe-2.5.2006.184.15.37.ebuild 4527 RMD160 62e7e0c82ebb065844b099bf2364b8b593b9f5e2 SHA1 6a8c44d91f35645c013e72ebf23684229d7602c8 SHA256 1722e925db92be0973bdba1cf23d2cf3872855c5bc199eceaecd041a2ee8b264 +MD5 cc093283cd526f6480e13d22e8170e4e nmrpipe-2.5.2006.184.15.37.ebuild 4527 +RMD160 62e7e0c82ebb065844b099bf2364b8b593b9f5e2 nmrpipe-2.5.2006.184.15.37.ebuild 4527 +SHA256 1722e925db92be0973bdba1cf23d2cf3872855c5bc199eceaecd041a2ee8b264 nmrpipe-2.5.2006.184.15.37.ebuild 4527 +MISC ChangeLog 2224 RMD160 ddace734c55eef9739418b8b6ee2e197c9142220 SHA1 82ede77dbb645b4131c0a6dc0ceed91b310f42e1 SHA256 e88b3a51239b545f9bae650f6b782246661386b9d9608e19930ee8da0120620c +MD5 72ec7ca895a25744b72cad5cbcf8d5a7 ChangeLog 2224 +RMD160 ddace734c55eef9739418b8b6ee2e197c9142220 ChangeLog 2224 +SHA256 e88b3a51239b545f9bae650f6b782246661386b9d9608e19930ee8da0120620c ChangeLog 2224 MISC metadata.xml 264 RMD160 cf3f81a4afc68eaedddaa967f048cdbcf7eef4de SHA1 c7bd1d575fa7ec212a1b64159a15447d86912bbc SHA256 24a6d9dcb843571bf17564df28d51dc16b83c8157a44bda62b1682aa4f4a90fe MD5 a1d7b37e094a7fdeebc37fee2f354d38 metadata.xml 264 RMD160 cf3f81a4afc68eaedddaa967f048cdbcf7eef4de metadata.xml 264 SHA256 24a6d9dcb843571bf17564df28d51dc16b83c8157a44bda62b1682aa4f4a90fe metadata.xml 264 -MD5 1e3746832adf60875e61757b9ffdd1ef files/digest-nmrpipe-2.3.2005.167.14.44 584 -RMD160 d09dafed928201f9595e0181db57c4ce9e9d575d files/digest-nmrpipe-2.3.2005.167.14.44 584 -SHA256 a92f4a6e940b97abf29b5b8f364eaa59edf4f41d2043e539eff1fa939b069353 files/digest-nmrpipe-2.3.2005.167.14.44 584 +MD5 b4fd45c2a060f46714dc1f3867f4154c files/digest-nmrpipe-2.5.2006.184.15.37 1739 +RMD160 142972ee6199818dc82fe8fb01902611f1191988 files/digest-nmrpipe-2.5.2006.184.15.37 1739 +SHA256 69f626ed5482c18b0a9cfab406bc27789184e0953669b854a21cccd7b0d5a696 files/digest-nmrpipe-2.5.2006.184.15.37 1739 diff --git a/sci-chemistry/nmrpipe/files/digest-nmrpipe-2.3.2005.167.14.44 b/sci-chemistry/nmrpipe/files/digest-nmrpipe-2.3.2005.167.14.44 deleted file mode 100644 index 474073efefa7..000000000000 --- a/sci-chemistry/nmrpipe/files/digest-nmrpipe-2.3.2005.167.14.44 +++ /dev/null @@ -1,10 +0,0 @@ -MD5 619771c84baeffe7e786ddd07c0d73ba nmrpipe.linux9.tar.Z 22505078 -MD5 bd7b0dfd903eab1df014bb9d7356612b xview_fonts.tar.Z 2183991 -MD5 06d27f018d0abd3e2e35fcd923423af3 xview.linux9.tar.Z 4047400 -MD5 0a03f5c8fb0fa48deb803b00ac5f4a3f dyn.tar.Z 37506563 -MD5 2fa433021210fe75c275910b67693015 mfr.tar.Z 829580 -MD5 b33e195e36e9c35a970632dc9670d312 pdbH.tar.Z 75004655 -MD5 af1c0e23c9d78025b9173fcbbb1c1f07 valpha.tar 490800640 -MD5 f8df76a619d702153a19b23f1678aca6 acme.tar.Z 11681951 -MD5 72a4802dcc912569d645f4cb5b27f5e5 binval.com 3209 -MD5 8c128c3c6a0840fd20f54ae40b330224 install.com 20812 diff --git a/sci-chemistry/nmrpipe/nmrpipe-2.3.2005.167.14.44.ebuild b/sci-chemistry/nmrpipe/nmrpipe-2.3.2005.167.14.44.ebuild deleted file mode 100644 index 4d99d29d4966..000000000000 --- a/sci-chemistry/nmrpipe/nmrpipe-2.3.2005.167.14.44.ebuild +++ /dev/null @@ -1,136 +0,0 @@ -# Copyright 1999-2006 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/nmrpipe/nmrpipe-2.3.2005.167.14.44.ebuild,v 1.3 2006/02/05 06:56:17 ribosome Exp $ - -DESCRIPTION="Spectral visualisation, analysis and Fourier processing" -# The specific terms of this license are printed automatically on startup -# by some NMRPipe applications. The user also has to accept them before -# downloading the package. -LICENSE="as-is" -HOMEPAGE="http://spin.niddk.nih.gov/bax/software/NMRPipe/" -# The NMRPipe installation script which we are not allowed to modify -# requires all the following to be present for a complete installation. -# Many of the bundled applications and libraries are afterwards deleted -# (by this ebuild). The Gentoo provided applications and libraries are -# used instead. The notable exception is the Tcl/Tk libraries; NMRPipe -# requires a modified version of these. Unfortunately, this requires to -# redefine the location of the libraries, which is done by sourcing an -# initialisation script. NMRPipe users are used to this, and this ebuild -# also prints a notice to this effect. -SRC_URI="${PN}.linux9.tar.Z - xview_fonts.tar.Z - xview.linux9.tar.Z - dyn.tar.Z - mfr.tar.Z - pdbH.tar.Z - valpha.tar - acme.tar.Z - binval.com - install.com" - -SLOT="0" -IUSE="" -# Right now, precompiled executables are only available for Linux on the -# x86 architecture. The maintainer chose to keep the sources closed, but -# says he will gladly provide precompiled executables for other platforms -# if there are such requests. -KEYWORDS="-* ~x86" - -# The maintainer absolutely wants to control redistribution. -RESTRICT="fetch" - -DEPEND="app-shells/tcsh - dev-lang/f2c" - -RDEPEND="${DEPEND} - dev-lang/tcl - dev-lang/tk - dev-tcltk/blt - sci-visualization/gnuplot - sci-chemistry/rasmol - sys-libs/libtermcap-compat - sys-libs/ncurses - x11-libs/xview - || ( x11-libs/libX11 virtual/x11 )" - -S="${WORKDIR}" -NMRBASE="/opt/${PN}" - -pkg_nofetch() { - einfo "Please visit:" - einfo "\t${HOMEPAGE}" - einfo - einfo "Contact the package maintainer, then download the following files:" - for i in ${A}; do - einfo "\t${i}" - done - einfo - einfo "Place the downloaded files in your distfiles directory:" - einfo "\t${DISTDIR}" - echo -} - -src_unpack() { - # The installation script will unpack the package. We just provide symlinks - # to the archive files, ... - for i in ${PN}.linux9.tar.Z xview_fonts.tar.Z xview.linux9.tar.Z \ - dyn.tar.Z mfr.tar.Z pdbH.tar.Z valpha.tar acme.tar.Z; do - ln -s "${DISTDIR}"/${i} ${i} - done - # ... copy the installation scripts ... - cp "${DISTDIR}"/{binval.com,install.com} . - # ... and make the installation scripts executable. - chmod +x binval.com install.com -} - -src_compile() { - # Unset DISPLAY to avoid the interactive graphical test. - DISPLAY="" ./install.com "${S}" || die - # Remove the symlinks for the archives and the installation scripts. - for i in ${A}; do - rm ${i} || die "Failed to remove archive symlinks." - done - # Remove some of the bundled applications and libraries; they are - # provided by Gentoo instead. - rm -r xview XView nmrbin.linux9/{0.0,lib,*timestamp,xv,gnuplot*,rasmol*} \ - || die "Failed to remove unnecessary libraries." - # Remove the initialisation script generated during the installation. - # It contains incorrect hardcoded paths; only the "nmrInit.com" script - # should be used. - rm com/nmrInit.linux9.com || die "Failed to remove broken init script." - # Make the precompiled Linux binaries executable. - chmod +x nmrbin.linux9/* || die "Failed to make programs executable." - # Set the correct path to NMRPipe in the auxiliary scripts. - cd com - for i in *; do - sed -e "s%/u/delaglio%${NMRBASE}%" -i ${i} || die \ - "Failed patching scripts." - done - # Remove installation log files. - cd "${S}" - rm *.log || die "Failed to remove installation log." -} - -src_install() { - newenvd "${FILESDIR}"/env-${PN} 40${PN} || die "Failed to install env file." - insinto ${NMRBASE} - insopts -m0755 - doins -r * || die "Failed to install application." - dosym ${NMRBASE}/nmrbin.linux9 ${NMRBASE}/bin || die \ - "Failed to symlink binaries." -} - -pkg_postinst() { - echo - ewarn "Before using NMRPipe applications, users must source the following" - ewarn "csh script, which will set the necessary environment variables:" - ewarn "\t${NMRBASE}/com/nmrInit.com" - ewarn - ewarn "Be aware that this script redefines the locations of the Tcl" - ewarn "libraries. This could break other non-NMRPipe Tcl applications" - ewarn "run in the same session." - ewarn - ewarn "Using Dynamo does not require running an additional initialisation" - ewarn "script. The necessary environment variables should already be set." - echo -} |