sci-libs/scipy: Version Bump

(Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

3 files changed, 150 insertions, 9 deletions

diff --git a/sci-libs/scipy/ChangeLog b/sci-libs/scipy/ChangeLog
index f54a58b58fe3..271e2b5b715e 100644
--- a/sci-libs/scipy/ChangeLog
+++ b/sci-libs/scipy/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-libs/scipy
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.97 2013/09/10 02:43:58 patrick Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.98 2013/10/13 17:54:35 jlec Exp $
+
+*scipy-0.12.1 (13 Oct 2013)
+
+  13 Oct 2013; Justin Lecher <jlec@gentoo.org> +scipy-0.12.1.ebuild,
+  metadata.xml:
+  Version Bump
 
   10 Sep 2013; Patrick Lauer <patrick@gentoo.org> scipy-0.12.0.ebuild:
   Whitespace
diff --git a/sci-libs/scipy/metadata.xml b/sci-libs/scipy/metadata.xml
index 4ee19593821e..350066e901ec 100644
--- a/sci-libs/scipy/metadata.xml
+++ b/sci-libs/scipy/metadata.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
+  <herd>sci</herd>
+  <longdescription lang="en">
   SciPy is an open source library of scientific tools for Python. SciPy
   supplements the popular numpy module, gathering a variety of high level
   science and engineering modules together as a single package.
@@ -10,10 +10,10 @@
   integration, special functions, signal and image processing, genetic
   algorithms, ODE solvers, and others.
 </longdescription>
-<use>
-  <flag name="sparse">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag>
-</use>
-<upstream>
-  <remote-id type="pypi">scipy</remote-id>
-</upstream>
+  <use>
+    <flag name="sparse">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag>
+  </use>
+  <upstream>
+    <remote-id type="pypi">scipy</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-libs/scipy/scipy-0.12.1.ebuild b/sci-libs/scipy/scipy-0.12.1.ebuild
new file mode 100644
index 000000000000..c9709a9ae293
--- /dev/null
+++ b/sci-libs/scipy/scipy-0.12.1.ebuild
@@ -0,0 +1,135 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.12.1.ebuild,v 1.1 2013/10/13 17:54:35 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} )
+
+inherit eutils fortran-2 distutils-r1 flag-o-matic multilib toolchain-funcs
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="http://www.scipy.org/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
+	doc? (
+		http://docs.scipy.org/doc/${PN}/${PN}-html.zip -> ${P}-html.zip
+		http://docs.scipy.org/doc/${PN}/${PN}-ref.pdf -> ${P}-ref.pdf
+	)"
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc sparse test"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
+
+CDEPEND="
+	dev-python/numpy[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack
+	virtual/cblas
+	virtual/lapack
+	sparse? ( sci-libs/umfpack )"
+DEPEND="${CDEPEND}
+	dev-lang/swig
+	dev-python/cython[${PYTHON_USEDEP}]
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	test? ( dev-python/nose[${PYTHON_USEDEP}] )"
+
+RDEPEND="${CDEPEND}
+	virtual/python-imaging[${PYTHON_USEDEP}]"
+
+DOCS=( HACKING.rst.txt README.txt THANKS.txt LATEST.txt TOCHANGE.txt )
+
+DISTUTILS_IN_SOURCE_BUILD=1
+
+src_unpack() {
+	unpack ${P}.tar.gz
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${P}-html.zip -d html || die
+	fi
+}
+
+pc_incdir() {
+	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//'
+}
+
+pc_libdir() {
+	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
+		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//'
+}
+
+pc_libs() {
+	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
+		sed -e 's/[ ]-l*\(pthread\|m\)[ ]*//g' \
+		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//'
+}
+
+python_prepare_all() {
+	# scipy automatically detects libraries by default
+	export {FFTW,FFTW3,UMFPACK}=None
+	use sparse && unset UMFPACK
+	# the missing symbols are in -lpythonX.Y, but since the version can
+	# differ, we just introduce the same scaryness as on Linux/ELF
+	[[ ${CHOST} == *-darwin* ]] \
+		&& append-ldflags -bundle "-undefined dynamic_lookup" \
+		|| append-ldflags -shared
+	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
+	# hack to force F77 to be FC until bug #278772 is fixed
+	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
+	export F90="${FC}"
+	export SCIPY_FCONFIG="config_fc --noopt --noarch"
+	append-fflags -fPIC
+
+	local libdir="${EPREFIX}"/usr/$(get_libdir)
+	cat >> site.cfg <<-EOF
+		[blas]
+		include_dirs = $(pc_incdir cblas)
+		library_dirs = $(pc_libdir cblas blas):${libdir}
+		blas_libs = $(pc_libs cblas blas)
+		[lapack]
+		library_dirs = $(pc_libdir lapack):${libdir}
+		lapack_libs = $(pc_libs lapack)
+	EOF
+
+	local PATCHES=(
+		"${FILESDIR}"/${PN}-0.12.0-gerqf.patch
+		"${FILESDIR}"/${PN}-0.12.0-blitz.patch
+		"${FILESDIR}"/${PN}-0.12.0-restore-sys-argv.patch
+		"${FILESDIR}"/${PN}-0.12.0-cephes-missing-include.patch
+	)
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	distutils-r1_python_compile ${SCIPY_FCONFIG}
+}
+
+python_test() {
+	distutils_install_for_testing ${SCIPY_FCONFIG}
+	cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
+	# nasty hack to remove weave tests because it is not python3 compat
+	[[ ${TEST_DIR} =~ python3 ]] && rm -r "${TEST_DIR}"/lib/scipy/weave
+#r = scipy.test('full', verbose=10)
+	"${EPYTHON}" -c "
+import scipy, sys
+r = scipy.test('fast',verbose=2)
+sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install_all() {
+	if use doc; then
+		dohtml -r "${WORKDIR}"/html/.
+		dodoc "${DISTDIR}"/${P}*pdf
+	fi
+	distutils-r1_python_install_all
+}
+
+python_install() {
+	distutils-r1_python_install ${SCIPY_FCONFIG}
+}
+
+pkg_postinst() {
+	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
+	elog "to your prefered image viewer. Example:"
+	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
+}