Initial commit.

(Portage version: 2.0.51.22-r1)

6 files changed, 209 insertions, 0 deletions

diff --git a/sci-chemistry/molmol/ChangeLog b/sci-chemistry/molmol/ChangeLog
new file mode 100644
index 000000000000..88a553701a21
--- /dev/null
+++ b/sci-chemistry/molmol/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/molmol
+# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molmol/ChangeLog,v 1.1 2005/07/13 10:12:46 spyderous Exp $
+
+*molmol-2k_p2 (13 Jul 2005)
+
+  13 Jul 2005; Donnie Berkholz <spyderous@gentoo.org>;
+  +files/pjf_RH9_molmol2k2.diff, +metadata.xml, +molmol-2k_p2.ebuild:
+  Initial commit.
+
diff --git a/sci-chemistry/molmol/Manifest b/sci-chemistry/molmol/Manifest
new file mode 100644
index 000000000000..b308177725d2
--- /dev/null
+++ b/sci-chemistry/molmol/Manifest
@@ -0,0 +1,3 @@
+MD5 2baf701562c1f1d280505879b90eb40e molmol-2k_p2.ebuild 2033
+MD5 cf1e205f2decc5b55e9970d9b74f199b files/pjf_RH9_molmol2k2.diff 3655
+MD5 362482186ee96b64ce53b5e0bea55df6 files/digest-molmol-2k_p2 140
diff --git a/sci-chemistry/molmol/files/digest-molmol-2k_p2 b/sci-chemistry/molmol/files/digest-molmol-2k_p2
new file mode 100644
index 000000000000..ace8b09d3c59
--- /dev/null
+++ b/sci-chemistry/molmol/files/digest-molmol-2k_p2
@@ -0,0 +1,2 @@
+MD5 e1f4416d8041a67fa08cadb03ed91c7c molmol-2k.2.0-src.tar.gz 1088805
+MD5 517545b60b0179ab691a679ed29903a7 molmol-2k.2.0-doc.tar.gz 1062297
diff --git a/sci-chemistry/molmol/files/pjf_RH9_molmol2k2.diff b/sci-chemistry/molmol/files/pjf_RH9_molmol2k2.diff
new file mode 100644
index 000000000000..5ce277086190
--- /dev/null
+++ b/sci-chemistry/molmol/files/pjf_RH9_molmol2k2.diff
@@ -0,0 +1,115 @@
+Only in molmol_rh9: makedef
+diff -ru molmol_rh9_unpatched/makedef.lnx molmol_rh9/makedef.lnx
+--- molmol_rh9_unpatched/makedef.lnx	2003-01-20 16:10:18.000000000 -0500
++++ molmol_rh9/makedef.lnx	2003-05-06 10:40:08.000000000 -0400
+@@ -1,31 +1,38 @@
+ # definitions for Linux
+ 
+-MISSFUNC = -Dsqrtf=sqrt -Dexpf=exp -Dlogf=log -Dpowf=pow \
+-           -Dsinf=sin -Dcosf=cos -Dtanf=tan \
+-           -Dasinf=asin -Dacosf=acos -Datanf=atan -Datan2f=atan2 \
+-           -Dfabsf=fabs -Dceilf=ceil
+-MCPPFLAGS = $(MISSFUNC)
+-MCFLAGS = -O2
+-
+-RANLIB = /bin/true
+-WAIT   = /usr/bin/sleep 2
+-SHELL  = /bin/sh
+-CPP    = /lib/cpp
+-CC     = /usr/bin/gcc
++#TIFFDIR = $(TOP)/tiff-v3.4/libtiff
++#JPEGDIR = $(TOP)/../libjpeg/jpeg-6a
++#PNGDIR = $(TOP)/../libpng/libpng-0.89c
++#ZLIBDIR = $(TOP)/../libpng/zlib-1.0.2
++
++IMGDEF  = -DTIFF_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT
++IMGLIB  = -ltiff -ljpeg -lpng -lz
++IMGINCL = # -I$(TIFFDIR) -I$(JPEGDIR) -I$(PNGDIR) -I$(ZLIBDIR)
++
++XINCL   = -I/usr/X11R6/include
++
++CC=gcc
++MCPPFLAGS =
++MCFLAGS =-pipe -O3 -ffast-math -march=i686 -mcpu=i686
++
++RANLIB   = /bin/true
++WAIT     = sleep 2
++SHELL    = /bin/sh
++CPP      = /lib/cpp
+ 
+-SGDEVDIR = x11 no pov rib vrml1 vrml2 ps fm
+-
+-SGDEVDEF = -DSG_DEV_X11 -DSG_DEV_NO -DSG_DEV_POV -DSG_DEV_RIB -DSG_DEV_VRML1 -DSG_DEV_VRML2 -DSG_DEV_PS -DSG_DEV_CPS -DSG_DEV_FM3 -DSG_DEV_FM4
++SGDEVDIR = ogl x11 no pov rib vrml1 vrml2 ps fm
++SGDEVDEF = -DSG_DEV_OGL -DSG_DEV_X11 -DSG_DEV_NO -DSG_DEV_POV -DSG_DEV_RIB -DSG_DEV_VRML1 -DSG_DEV_VRML2 -DSG_DEV_PS -DSG_DEV_CPS -DSG_DEV_FM3 -DSG_DEV_FM4
+ 
+ PUDEVDIR = motif tty
+ PUDEVDEF = -DPU_DEV_MOTIF -DPU_DEV_TTY
+ 
+-IODEVDIR = motx11 ttyno
+-IODEVDEF = -DIO_DEV_MOTIF_X11 -DIO_DEV_TTY_NO
++IODEVDIR = motogl motx11 ttyno
++IODEVDEF = -DIO_DEV_MOTIF_OGL -DIO_DEV_MOTIF_X11 -DIO_DEV_TTY_NO
+ 
++OPENGLDEF = -DOPENGL_SGI_STEREO
+ MOTIFDEF = -DFUNCPROTO
+ 
+-SYSLIB   = -L/usr/X11R6/lib -lXm -lXt -lXpm -lX11 -lm -lc -lieee
++SYSLIB   = -lGLw -lGLU -lGL -lXm -lXp -lXt -lXext -lX11 -lm
+ 
+ TOOLSDIR = $(TOP)/tools
+-SGDIR    = $(TOP)/sg
++SGDIR   = $(TOP)/sg
+diff -ru molmol_rh9_unpatched/src/main/Makefile molmol_rh9/src/main/Makefile
+--- molmol_rh9_unpatched/src/main/Makefile	1997-02-17 10:01:14.000000000 -0500
++++ molmol_rh9/src/main/Makefile	2003-05-06 11:56:55.000000000 -0400
+@@ -22,7 +22,7 @@
+ default: $(PROGRAM)
+ 
+ $(PROGRAM): $(OBJ) $(LIBS) $(SGLIB) $(TOOLSLIB)
+-	$(CC) -o $@ $(CFLAGS) $(OBJ) $(LIBS) $(SGLIB) $(TOOLSLIB) $(SYSLIB)
++	$(CC) -o $@ $(CFLAGS) $(OBJ) $(LIBS) $(SGLIB) $(TOOLSLIB) $(SYSLIB) -L/usr/X11R6/lib
+ 
+ clean:
+ 	rm -f $(OBJ) $(PROGRAM) core *.ps
+diff -ru molmol_rh9_unpatched/src/motogl/MotOGL.c molmol_rh9/src/motogl/MotOGL.c
+--- molmol_rh9_unpatched/src/motogl/MotOGL.c	2000-05-29 12:31:51.000000000 -0400
++++ molmol_rh9/src/motogl/MotOGL.c	2003-05-06 11:51:05.000000000 -0400
+@@ -31,7 +31,7 @@
+ #include <Xm/XmStrDefs.h>
+ 
+ #define BOOL MOTIF_BOOL  /* hack to avoid naming conflict */
+-#include <X11/GLw/GLwMDrawA.h>
++#include <GL/GLwMDrawA.h>
+ #undef BOOL
+ 
+ #include <sg.h>
+diff -ru molmol_rh9_unpatched/src/os/GFile.c molmol_rh9/src/os/GFile.c
+--- molmol_rh9_unpatched/src/os/GFile.c	2001-06-17 14:59:17.000000000 -0400
++++ molmol_rh9/src/os/GFile.c	2003-05-06 12:34:34.000000000 -0400
+@@ -30,6 +30,7 @@
+ #include <string.h>
+ #include <memory.h>
+ #include <ctype.h>
++#include <errno.h>
+ 
+ #include <linlist.h>
+ 
+@@ -38,7 +39,7 @@
+ const INT32 GFMagic = 0x3b7a12f9;
+ 
+ #ifndef __linux__
+-extern char *sys_errlist[];
++extern char *strerror();
+ #endif
+ extern int errno;
+ 
+@@ -81,7 +82,7 @@
+ {
+   if (msg == NULL) {
+     if (NextMsg == NULL)
+-      msg = sys_errlist[errno];
++      msg = strerror(errno);
+     else
+       msg = NextMsg;
+   }
diff --git a/sci-chemistry/molmol/metadata.xml b/sci-chemistry/molmol/metadata.xml
new file mode 100644
index 000000000000..211b8bd0f0a4
--- /dev/null
+++ b/sci-chemistry/molmol/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+<email>spyderous@gentoo.org</email>
+<name>Donnie Berkholz</name>
+</maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/molmol/molmol-2k_p2.ebuild b/sci-chemistry/molmol/molmol-2k_p2.ebuild
new file mode 100644
index 000000000000..d7765bf4ed99
--- /dev/null
+++ b/sci-chemistry/molmol/molmol-2k_p2.ebuild
@@ -0,0 +1,70 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molmol/molmol-2k_p2.ebuild,v 1.1 2005/07/13 10:12:46 spyderous Exp $
+
+inherit eutils toolchain-funcs multilib
+
+MY_PV="${PV/_p/.}.0"
+MY_P="${PN}-${MY_PV}"
+
+DESCRIPTION="Publication-quality molecular visualization package"
+HOMEPAGE="http://hugin.ethz.ch/wuthrich/software/molmol/index.html"
+SRC_URI="ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/unix-gzip/${MY_P}-src.tar.gz
+	ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/unix-gzip/${MY_P}-doc.tar.gz"
+LICENSE="molmol"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+DEPEND="virtual/motif
+	virtual/x11
+	media-libs/jpeg
+	media-libs/tiff
+	media-libs/libpng
+	sys-libs/zlib"
+# Run-time dependencies, same as DEPEND if RDEPEND isn't defined:
+#RDEPEND=""
+# Yeah, the gz's aren't in a subdir.
+S=${WORKDIR}
+
+MMDIR="/usr/$(get_libdir)/molmol"
+
+src_unpack() {
+	unpack ${A}
+
+	# Patch from http://pjf.net/science/molmol.html, where src.rpm is provided
+	epatch ${FILESDIR}/pjf_RH9_molmol2k2.diff
+
+	ln -s makedef.lnx ${S}/makedef
+
+	# 1) The Korn shell is only taken by default because the Bourne shell
+	# on DEC systems cannot handle the script.
+	# We don't want this needless dependency.
+	# 2) Fix up MOLMOLHOME, which determines the directory the binary's in.
+	sed -i \
+		-e "s:/bin/ksh:/bin/sh:" \
+		-e "s:^MOLMOLHOME.*:MOLMOLHOME=${MMDIR}:" \
+		${S}/molmol
+	# 1) Set CFLAGS.
+	# 2) Set compiler.
+	sed -i \
+		-e "s:^MCFLAGS.*:MCFLAGS = ${CFLAGS}:" \
+		-e "s:^CC.*:CC = $(tc-getCC):" \
+		${S}/makedef
+}
+
+src_compile() {
+	emake || die "emake failed"
+}
+
+src_install() {
+	dobin molmol
+
+	EXEDESTTREE=/usr/lib/molmol newexe src/main/molmol molmol.lnx
+
+	# Macros, setup and tips must be subdirs of molmol.
+	# Perhaps we should do /usr/lib/molmol?
+
+	INSDESTTREE=${MMDIR} doins -r auxil help macros man setup tips
+
+	dodoc HISTORY README
+}