diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2013-05-11 12:39:55 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-05-11 12:39:55 +0000 |
| commit | eb1b77cf618bff18ebfa652af96bdf3e21990eb6 (patch) | |
| tree | 2ed7b6c565211f1839a785ae0407ac7110f09812 /sci-chemistry | |
| parent | add ~arm, bug #456736 (diff) | |
| download | gentoo-2-eb1b77cf618bff18ebfa652af96bdf3e21990eb6.tar.gz gentoo-2-eb1b77cf618bff18ebfa652af96bdf3e21990eb6.tar.bz2 gentoo-2-eb1b77cf618bff18ebfa652af96bdf3e21990eb6.zip | |
sci-chemistry/tm-align: Version Bump
(Portage version: 2.2.0_alpha174/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
Diffstat (limited to 'sci-chemistry')
| -rw-r--r-- | sci-chemistry/tm-align/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-chemistry/tm-align/metadata.xml | 10 | ||||
| -rw-r--r-- | sci-chemistry/tm-align/tm-align-20130508.ebuild | 25 |
3 files changed, 37 insertions, 6 deletions
diff --git a/sci-chemistry/tm-align/ChangeLog b/sci-chemistry/tm-align/ChangeLog index 9ad60c485ab3..8afb55c3c08f 100644 --- a/sci-chemistry/tm-align/ChangeLog +++ b/sci-chemistry/tm-align/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-chemistry/tm-align # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.4 2013/02/05 18:30:14 ulm Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.5 2013/05/11 12:39:55 jlec Exp $ + +*tm-align-20130508 (11 May 2013) + + 11 May 2013; Justin Lecher <jlec@gentoo.org> +tm-align-20130508.ebuild, + metadata.xml: + Version Bump 05 Feb 2013; Ulrich Müller <ulm@gentoo.org> tm-align-20120124.ebuild, tm-align-20120707.ebuild: diff --git a/sci-chemistry/tm-align/metadata.xml b/sci-chemistry/tm-align/metadata.xml index da6700a6429b..1e724495b8e2 100644 --- a/sci-chemistry/tm-align/metadata.xml +++ b/sci-chemistry/tm-align/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <herd>sci-chemistry</herd> - <maintainer> - <email>jlec@gentoo.org</email> - </maintainer> - <longdescription> + <herd>sci-chemistry</herd> + <maintainer> + <email>jlec@gentoo.org</email> + </maintainer> + <longdescription> TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix. An optimal alignment between two proteins, as well as the TM-score, will be reported for each comparison. The diff --git a/sci-chemistry/tm-align/tm-align-20130508.ebuild b/sci-chemistry/tm-align/tm-align-20130508.ebuild new file mode 100644 index 000000000000..f7bb39e2ae0b --- /dev/null +++ b/sci-chemistry/tm-align/tm-align-20130508.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20130508.ebuild,v 1.1 2013/05/11 12:39:55 jlec Exp $ + +EAPI=5 + +inherit cmake-utils flag-o-matic fortran-2 + +DESCRIPTION="Quick & Accurate Structural Alignment" +HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/TM-align/" +SRC_URI="http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools${PV}.tar.gz" + +LICENSE="tm-align" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="static custom-cflags" + +S="${WORKDIR}" + +src_prepare() { + cp "${FILESDIR}"/CMakeLists.txt . || die + use static && append-fflags -static && append-ldflags -static + # recommended by upstream + use custom-cflags || replace-flags -O* -O3 && append-fflags -ffast-math +} |