Add upstream patches. The build system won't accept LDFLAGS, so unset them. (#142183) Source the setup script again in src_install() to make sure CBIN and CCP4_LIB get set. Not doing this breaks USE=X because the Imakefiles use them. Stop changing the value of CCP4_LIB, that was only necessary for the bindir=/usr/bin, libdir=/usr/libdir install, which was too much work.

(Portage version: 2.1.1_pre4-r2)

3 files changed, 503 insertions, 1 deletions

diff --git a/sci-chemistry/ccp4/ChangeLog b/sci-chemistry/ccp4/ChangeLog
index 5696511daf85..4b3519f47530 100644
--- a/sci-chemistry/ccp4/ChangeLog
+++ b/sci-chemistry/ccp4/ChangeLog
@@ -1,6 +1,16 @@
 # ChangeLog for sci-chemistry/ccp4
 # Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4/ChangeLog,v 1.3 2006/08/05 05:06:08 dberkholz Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4/ChangeLog,v 1.4 2006/08/07 03:42:00 dberkholz Exp $
+
+*ccp4-6.0.1-r1 (07 Aug 2006)
+
+  07 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>;
+  +ccp4-6.0.1-r1.ebuild:
+  Add upstream patches. The build system won't accept LDFLAGS, so unset them.
+  (#142183) Source the setup script again in src_install() to make sure CBIN
+  and CCP4_LIB get set. Not doing this breaks USE=X because the Imakefiles use
+  them. Stop changing the value of CCP4_LIB, that was only necessary for the
+  bindir=/usr/bin, libdir=/usr/libdir install, which was too much work.
 
   05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
   Remove myself as maintainer, anyone feel free to work on this, although I'll
diff --git a/sci-chemistry/ccp4/ccp4-6.0.1-r1.ebuild b/sci-chemistry/ccp4/ccp4-6.0.1-r1.ebuild
new file mode 100644
index 000000000000..997e42a76d66
--- /dev/null
+++ b/sci-chemistry/ccp4/ccp4-6.0.1-r1.ebuild
@@ -0,0 +1,453 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4/ccp4-6.0.1-r1.ebuild,v 1.1 2006/08/07 03:42:00 dberkholz Exp $
+
+inherit fortran eutils gnuconfig toolchain-funcs
+
+FORTRAN="g77 gfortran ifc"
+
+SRC="ftp://ftp.ccp4.ac.uk/ccp4"
+
+PATCH_TOT="12"
+PATCH1=( src/mmdb_app_
+	chainsaw.cpp-11May2006.diff )
+PATCH2=( src
+	anisoanl.f-r1.22-r1.24.diff )
+PATCH3=( src/sc_
+	sc.f-r1.9-r1.9.2.1.diff )
+PATCH4=( src/sc_
+	setup.fh-r1.5-r1.5.2.1.diff )
+PATCH5=( src
+	contact.f-12June2006.diff )
+PATCH6=( ccp4i/tasks
+	refmac5.tcl-r1.39.2.3-r1.42.diff )
+PATCH7=( src
+	act.f-6July2006.diff )
+PATCH8=( src
+	rotmat.f-17July2006.diff )
+PATCH9=( src/molrep_
+	molrep.f-r1.28-r1.28.2.1.diff )
+PATCH10=( src
+	cad.f-r1.70-r1.72.diff )
+PATCH11=( src
+	mtztona4.f-r1.23-r1.24.diff )
+PATCH12=( src
+	omit.f-r1.12-r1.13.diff )
+
+DESCRIPTION="Protein X-ray crystallography toolkit"
+HOMEPAGE="http://www.ccp4.ac.uk/"
+RESTRICT="mirror stricter"
+SRC_URI="${SRC}/${PV}/packed/${P}-core-src.tar.gz"
+for i in $(seq $PATCH_TOT); do
+	NAME="PATCH${i}[1]"
+	SRC_URI="${SRC_URI}
+		${SRC}/${PV}/patches/${!NAME}"
+done
+LICENSE="ccp4"
+SLOT="0"
+KEYWORDS="~ppc ~x86"
+IUSE="X"
+# app-office/sc overlaps sc binary and man page
+# We can't rename ours since the automated ccp4i interface expects it there,
+# as do many scripts. app-office/sc can't rename its because that's the name
+# of the package.
+RDEPEND="X? (
+			|| (
+				(
+					x11-libs/libX11
+					x11-libs/libXt
+					x11-libs/libXaw
+				)
+				virtual/x11
+			)
+		)
+		>=dev-lang/tcl-8.3
+		>=dev-lang/tk-8.3
+		>=dev-tcltk/blt-2.4
+		virtual/lapack
+		virtual/blas
+		=sci-libs/fftw-2*
+		sci-chemistry/pdb-extract
+		sci-chemistry/rasmol
+		sci-libs/mccp4
+		|| ( app-shells/tcsh app-shells/csh )
+		!app-office/sc"
+# >=sys-apps/portage-2.1.1_pre1 for RESTRICT=stricter
+# Otherwise portage dies instead of fixing RPATHs
+DEPEND="${RDEPEND}
+		X? (
+			|| (
+				(
+					x11-misc/imake
+					x11-proto/inputproto
+					x11-proto/xextproto
+				)
+				virtual/x11
+			)
+		)
+		>=sys-apps/portage-2.1.1_pre1"
+
+S="${WORKDIR}/${PN}-${PV}"
+
+src_unpack() {
+	unpack ${A}
+	cd ${S}
+
+	einfo "Applying upstream patches ..."
+	for patch in $(seq $PATCH_TOT); do
+		base="PATCH${patch}"
+		dir=$(eval echo \${${base}[0]})
+		p=$(eval echo \${${base}[1]})
+		pushd ${dir} >& /dev/null
+		ccp_patch ${DISTDIR}/${p}
+		popd >& /dev/null
+	done
+	einfo "Done."
+	echo
+
+	einfo "Applying Gentoo patches ..."
+	# These two only needed when attempting to install outside build dir via
+	# --bindir and --libdir instead of straight copying after build
+
+	# it attempts to install some libraries during the build
+	#ccp_patch ${FILESDIR}/${P}-install-libs-at-install-time.patch
+	# hklview/ipdisp.exe/xdlmapman/ipmosflm can't find libxdl_view
+	# without this patch when --libdir is set
+	# Rotgen still needs more patching to find it
+	#ccp_patch ${FILESDIR}/add-xdl-libdir.patch
+
+	# it tries to create libdir, bindir etc on live system in configure
+	ccp_patch ${FILESDIR}/${PV}-dont-make-dirs-in-configure.patch
+
+	# We already have sci-chemistry/rasmol
+	ccp_patch ${FILESDIR}/dont-build-rasmol.patch
+
+	# We already have sci-chemistry/pdb-extract
+# Use configure option instead
+#	ccp_patch ${FILESDIR}/dont-build-pdb-extract.patch
+
+	ccp_patch ${FILESDIR}/create-mosflm-bindir.patch
+	ccp_patch ${FILESDIR}/make-mosflm-libdir.patch
+	ccp_patch ${FILESDIR}/make-mosflm-index-libdir.patch
+	ccp_patch ${FILESDIR}/make-mosflm-cbf-libdir.patch
+	ccp_patch ${FILESDIR}/make-ipmosflm-dir.patch
+
+# Don't use these when we aren't building phaser
+#	ccp_patch ${FILESDIR}/make-phaser-bindir.patch
+#	ccp_patch ${FILESDIR}/no-phaser-ld-assume-kernel.patch
+#	# scons config.py tries to chmod python on live system
+#	ccp_patch ${FILESDIR}/dont-chmod-python-binary.patch
+
+	# Don't use this when we aren't building clipper
+	# For some reason clipper check for $enableval even when --enable is passed
+	ccp_patch ${FILESDIR}/pass-clipper-enablevals.patch
+	ccp_patch ${FILESDIR}/clipper-find-mccp4-includes.patch
+
+	# Default to firefox browser, not 'netscape'
+	ccp_patch ${FILESDIR}/ccp4i-default-to-firefox.patch
+
+	# Also use -lpthread when linking blas and lapack
+	# We may need more fixing to use libcblas for the C files
+	ccp_patch ${FILESDIR}/check-blas-lapack-pthread.patch
+
+	# gerror_ gets defined twice on ppc if you're using gfortran/g95
+	ccp_patch ${FILESDIR}/${PV}-ppc-double-define-gerror.patch
+
+	einfo "Done." # done applying Gentoo patches
+	echo
+
+	gnuconfig_update
+}
+
+src_compile() {
+	# Build system is broken if we set LDFLAGS
+	unset LDFLAGS
+
+	# GENTOO_OSNAME can be one of:
+	# irix irix64 sunos sunos64 aix hpux osf1 linux freebsd
+	# linux_compaq_compilers linux_intel_compilers generic Darwin
+	# ia64_linux_intel Darwin_ibm_compilers linux_ibm_compilers
+	if [[ "${FORTRANC}" = "ifc" ]]; then
+		if use ia64; then
+			GENTOO_OSNAME="ia64_linux_intel"
+		else
+			# Should be valid for x86, maybe amd64
+			GENTOO_OSNAME="linux_intel_compilers"
+		fi
+	else
+		# Should be valid for x86 and amd64, at least
+		GENTOO_OSNAME="linux"
+	fi
+
+	# Sets up env
+	ln -s \
+		ccp4.setup-bash \
+		${S}/include/ccp4.setup
+
+	# We agree to the license by emerging this, set in LICENSE
+	sed -i \
+		-e "s~^\(^agreed=\).*~\1yes~g" \
+		${S}/configure
+
+	# Fix up variables -- need to reset CCP4_MASTER at install-time
+	sed -i \
+		-e "s~^\(setenv CCP4_MASTER.*\)/.*~\1${WORKDIR}~g" \
+		-e "s~^\(setenv CCP4I_TCLTK.*\)/usr/local/bin~\1/usr/bin~g" \
+		${S}/include/ccp4.setup*
+
+	# Set up variables for build
+	source ${S}/include/ccp4.setup
+
+	export CC=$(tc-getCC)
+	export CXX=$(tc-getCXX)
+	export COPTIM=${CFLAGS}
+	export CXXOPTIM=${CXXFLAGS}
+	# Default to -O2 if FFLAGS is unset
+	export FC=${FORTRANC}
+	export FOPTIM=${FFLAGS:- -O2}
+
+	# Can't use econf, configure rejects unknown options like --prefix
+	./configure \
+		$(use_enable X x) \
+		--with-shared-libs \
+		--with-fftw=/usr \
+		--with-warnings \
+		--disable-pdb_extract \
+		--disable-cctbx \
+		--disable-phaser \
+		--tmpdir="${TMPDIR}" \
+		${GENTOO_OSNAME} || die "econf failed"
+	emake -j1 || die "emake failed"
+}
+
+src_install() {
+	# Set up variables for build
+	source ${S}/include/ccp4.setup
+
+# Only needed when using --bindir and --libdir
+	# Needed to avoid errors. Originally tried to make lib and bin
+	# in configure script, now patched out by dont-make-dirs-in-configure.patch
+#	dodir /usr/include /usr/$(get_libdir) /usr/bin
+
+#	make install || die "install failed"
+	einstall || die "install failed"
+
+	# Fix env
+	sed -i \
+		-e "s~^\(setenv CCP4_MASTER.*\)${WORKDIR}~\1/usr~g" \
+		-e "s~^\(setenv CCP4.*\$CCP4_MASTER\).*~\1~g" \
+		-e "s~^\(setenv CCP4I_TOP\).*~\1 \$CCP4/$(get_libdir)/ccp4/ccp4i~g" \
+		-e "s~^\(.*setenv CINCL.*\$CCP4\).*~\1/share/ccp4/include~g" \
+		-e "s~^\(.*setenv CLIBD .*\$CCP4\).*~\1/share/ccp4/data~g" \
+		-e "s~^\(.*setenv CLIBD_MON .*\)\$CCP4.*~\1\$CLIBD/monomers/~g" \
+		-e "s~^\(.*setenv MOLREPLIB .*\)\$CCP4.*~\1\$CLIBD/monomers/~g" \
+		-e "s~^\(.*setenv CCP4_BROWSER.*\).*~\1 firefox~g" \
+		${S}/include/ccp4.setup*
+
+	# Get rid of S instances
+	# Also the main clipper library is built as libclipper-core, not libclipper
+	sed -i \
+		-e "s:${S}:${ROOT}usr:g" \
+		-e "s:lclipper :lclipper-core :g" \
+		${S}/bin/clipper-config
+#	sed -i \
+#		-e "s:${S}:${ROOT}usr:g" \
+#		${S}/$(get_libdir)/cctbx/cctbx_build/setpaths*
+
+	# Bins
+	EXEDESTTREE="/usr/bin" doexe ${S}/bin/*
+
+	# Libs
+	for file in ${S}/lib/*; do
+		if [[ -d ${file} ]]; then
+			continue
+		elif [[ -x ${file} ]]; then
+			dolib.so ${file}
+		else
+			INSDESTTREE="/usr/$(get_libdir)" doins ${file}
+		fi
+	done
+
+	# Fix libdir in all *.la files
+	sed -i \
+		-e "s:^\(libdir=\).*:\1\'/usr/$(get_libdir)\':g" \
+		${D}/usr/$(get_libdir)/*.la
+
+	# Library symlinks
+	local LIBNAMES="libclipper-ccp4.so.0.0.0
+		libclipper-cif.so.0.0.0
+		libclipper-contrib.so.0.0.0
+		libclipper-core.so.0.0.0
+		libclipper-minimol.so.0.0.0
+		libclipper-mmdbold.so.0.0.0
+		libclipper-mmdb.so.0.0.0
+		libclipper-mtz.so.1.0.0
+		libclipper-phs.so.0.0.0
+		libjwc_c.so.0.1.1
+		libjwc_f.so.0.1.1
+		libssm.so.0.0.0
+		libxdl_viewextra.so.0.0.0
+		libxdl_view.so.2.0.0"
+
+	for LIBNAME in ${LIBNAMES}; do
+		library_dosym ${LIBNAME}
+	done
+
+#	dosym libclipper-ccp4.so.0.0.0 /usr/$(get_libdir)/libclipper-ccp4.so
+#	dosym libclipper-ccp4.so.0.0.0 /usr/$(get_libdir)/libclipper-ccp4.so.0
+#	dosym libclipper-ccp4.so.0.0.0 /usr/$(get_libdir)/libclipper-ccp4.so.0.0
+#
+#	dosym libclipper-cif.so.0.0.0 /usr/$(get_libdir)/libclipper-cif.so
+#	dosym libclipper-cif.so.0.0.0 /usr/$(get_libdir)/libclipper-cif.so.0
+#	dosym libclipper-cif.so.0.0.0 /usr/$(get_libdir)/libclipper-cif.so.0.0
+#
+#	dosym libclipper-contrib.so.0.0.0 /usr/$(get_libdir)/libclipper-contrib.so
+#	dosym libclipper-contrib.so.0.0.0 /usr/$(get_libdir)/libclipper-contrib.so.0
+#	dosym libclipper-contrib.so.0.0.0 /usr/$(get_libdir)/libclipper-contrib.so.0.0
+#
+#	dosym libclipper-core.so.0.0.0 /usr/$(get_libdir)/libclipper-core.so
+#	dosym libclipper-core.so.0.0.0 /usr/$(get_libdir)/libclipper-core.so.0
+#	dosym libclipper-core.so.0.0.0 /usr/$(get_libdir)/libclipper-core.so.0.0
+#
+#	dosym libclipper-minimol.so.0.0.0 /usr/$(get_libdir)/libclipper-minimol.so
+#	dosym libclipper-minimol.so.0.0.0 /usr/$(get_libdir)/libclipper-minimol.so.0
+#	dosym libclipper-minimol.so.0.0.0 /usr/$(get_libdir)/libclipper-minimol.so.0.0
+#
+#	dosym libclipper-mmdbold.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdbold.so
+#	dosym libclipper-mmdbold.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdbold.so.0
+#	dosym libclipper-mmdbold.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdbold.so.0.0
+#
+#	dosym libclipper-mmdb.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdb.so
+#	dosym libclipper-mmdb.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdb.so.0
+#	dosym libclipper-mmdb.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdb.so.0.0
+#
+#	dosym libclipper-mtz.so.1.0.0 /usr/$(get_libdir)/libclipper-mtz.so
+#	dosym libclipper-mtz.so.1.0.0 /usr/$(get_libdir)/libclipper-mtz.so.1
+#	dosym libclipper-mtz.so.1.0.0 /usr/$(get_libdir)/libclipper-mtz.so.1.0
+#
+#	dosym libclipper-phs.so.0.0.0 /usr/$(get_libdir)/libclipper-phs.so
+#	dosym libclipper-phs.so.0.0.0 /usr/$(get_libdir)/libclipper-phs.so.0
+#	dosym libclipper-phs.so.0.0.0 /usr/$(get_libdir)/libclipper-phs.so.0.0
+#
+#	dosym libjwc_c.so.0.1.1 /usr/$(get_libdir)/libjwc_c.so
+#	dosym libjwc_c.so.0.1.1 /usr/$(get_libdir)/libjwc_c.so.0
+#	dosym libjwc_c.so.0.1.1 /usr/$(get_libdir)/libjwc_c.so.0.1
+#
+#	dosym libjwc_f.so.0.1.1 /usr/$(get_libdir)/libjwc_f.so
+#	dosym libjwc_f.so.0.1.1 /usr/$(get_libdir)/libjwc_f.so.0
+#	dosym libjwc_f.so.0.1.1 /usr/$(get_libdir)/libjwc_f.so.0.1
+#
+#	dosym libssm.so.0.0.0 /usr/$(get_libdir)/libssm.so
+#	dosym libssm.so.0.0.0 /usr/$(get_libdir)/libssm.so.0
+#	dosym libssm.so.0.0.0 /usr/$(get_libdir)/libssm.so.0.0
+#
+#	dosym libxdl_viewextra.so.0.0.0 /usr/$(get_libdir)/libxdl_viewextra.so
+#	dosym libxdl_viewextra.so.0.0.0 /usr/$(get_libdir)/libxdl_viewextra.so.0
+#	dosym libxdl_viewextra.so.0.0.0 /usr/$(get_libdir)/libxdl_viewextra.so.0.0
+#
+#	dosym libxdl_view.so.2.0.0 /usr/$(get_libdir)/libxdl_view.so
+#	dosym libxdl_view.so.2.0.0 /usr/$(get_libdir)/libxdl_view.so.2
+#	dosym libxdl_view.so.2.0.0 /usr/$(get_libdir)/libxdl_view.so.2.0
+
+	# Environment files, setup scripts, etc.
+	INSDESTTREE="/usr/share/ccp4/include" doins ${S}/include/*
+
+	# CCP4Interface - GUI
+	INSDESTTREE="/usr/$(get_libdir)/ccp4" doins -r ${S}/ccp4i
+	EXEDESTTREE="/usr/$(get_libdir)/ccp4/ccp4i/bin" doexe ${S}/ccp4i/bin/*
+
+	# Data
+	INSDESTTREE="/usr/share/ccp4" doins -r ${S}/lib/data
+
+	# Include files
+	for i in ccp4 clipper mmdb ssm; do
+		INSDESTTREE="/usr/include" doins -r ${S}/include/${i}
+	done
+
+	# Install docs and examples
+
+	doman ${S}/man/cat1/*
+
+	mv ${S}/manual/README ${S}/manual/README-manual
+	dodoc ${S}/manual/*
+
+	dodoc ${S}/README ${S}/CHANGES
+
+	dodoc ${S}/doc/*
+	rm ${D}/usr/share/doc/${PF}/GNUmakefile.gz
+	rm ${D}/usr/share/doc/${PF}/COPYING.gz
+
+	dohtml -r ${S}/html/*
+	dodoc ${S}/examples/README
+
+	# Fix wrongly installed HTML pages from clipper
+	dohtml "${D}"/usr/html/*
+	rm -rf "${D}"/usr/html
+
+	for i in data rnase toxd; do
+		DOCDESTTREE="examples/${i}" dodoc ${S}/examples/${i}/*
+	done
+
+	DOCDESTTREE="examples/tutorial" dohtml -r ${S}/examples/tutorial/html
+	DOCDESTTREE="examples/tutorial" dohtml examples/tutorial/tut.css
+	for i in data results; do
+		DOCDESTTREE="examples/tutorial/${i}" dodoc ${S}/examples/tutorial/${i}/*
+	done
+
+	for i in non-runnable runnable; do
+		DOCDESTTREE="examples/unix/${i}" dodoc ${S}/examples/unix/${i}
+	done
+
+	# Needed for ccp4i docs to work
+	dosym ../../share/doc/${PF}/examples /usr/$(get_libdir)/ccp4/examples
+	dosym ../../share/doc/${PF}/html /usr/$(get_libdir)/ccp4/html
+
+	# Fix overlaps with other packages
+	rm ${D}/usr/share/man/man1/rasmol.1.gz
+}
+
+pkg_postinst() {
+	einfo "The Web browser defaults to firefox. Change CCP4_BROWSER"
+	einfo "in /usr/share/ccp4/include/ccp4.setup* to modify this."
+
+	ewarn "Set your .bashrc or other shell login file to source"
+	ewarn "one of the ccp4.setup* files in ${ROOT}usr/share/ccp4/include."
+	ewarn "CCP4 will not work without this."
+}
+
+# Epatch wrapper for bulk patching
+ccp_patch() {
+	EPATCH_SINGLE_MSG="  ${1##*/} ..." epatch ${1}
+}
+
+# Links libname.so, libname.so.major and libname.so.major.minor
+# to libname.so.major.minor.micro
+library_dosym() {
+	local LIBNAME LIBDIR SUFFIX CORE_LIBNAME LIB_MAJOR LIB_MINOR LIB_VERSIONS
+
+	LIBNAME=${1}
+	LIBDIR=${2:-/usr/$(get_libdir)}
+
+	# Tag / on the end of libdir if needed
+	if [[ ${LIBDIR:$((${#LIBDIR}-1)):1} != "/" ]]; then
+		LIBDIR="${LIBDIR}/"
+	fi
+
+	if [[ "${LIBNAME}" != *.so.* ]]; then
+		msg="library_dosym() requires a shared, versioned library as an argument"
+		eerror "$msg"
+		die "$msg"
+	fi
+
+	SUFFIX=${LIBNAME##*so.}
+	CORE_LIBNAME=${LIBNAME%.so.*}
+	CORE_LIBNAME="${CORE_LIBNAME}.so"
+	LIB_MAJOR=${SUFFIX%%.*}
+	LIB_MINOR=${SUFFIX#*.}
+	LIB_MINOR=${SUFFIX%%.*}
+	LIB_VERSIONS="${LIB_MAJOR} ${LIB_MAJOR}.${LIB_MINOR}"
+	for LIB_SUFFIX in .${LIB_MAJOR} .${LIB_MAJOR}.${LIB_MINOR} ""; do
+		einfo "Calling dosym ${LIBNAME} ${LIBDIR} ${CORE_LIBNAME} ${LIB_SUFFIX}"
+		dosym ${LIBNAME} ${LIBDIR}${CORE_LIBNAME}${LIB_SUFFIX}
+	done
+}
diff --git a/sci-chemistry/ccp4/files/digest-ccp4-6.0.1-r1 b/sci-chemistry/ccp4/files/digest-ccp4-6.0.1-r1
new file mode 100644
index 000000000000..e83d992ca239
--- /dev/null
+++ b/sci-chemistry/ccp4/files/digest-ccp4-6.0.1-r1
@@ -0,0 +1,39 @@
+MD5 21f240d6cf7c743b8062f3765105031c act.f-6July2006.diff 16544
+RMD160 24f48e95ec3363a2409da122bd0eb7ef5a91da36 act.f-6July2006.diff 16544
+SHA256 ba807b19b834d68ff121e34bbfbb113ae528db1aeebfeb7e98cbb90c64c2c3c4 act.f-6July2006.diff 16544
+MD5 31d485acdd0c5e83a4d3d637aa83f808 anisoanl.f-r1.22-r1.24.diff 9452
+RMD160 02f9561362892cbbeed24592b5ed4e3eb51ace2c anisoanl.f-r1.22-r1.24.diff 9452
+SHA256 1308ef91c63efd1c11287f68f386a62678d1ab48ddfe6e94cefdef1c92173940 anisoanl.f-r1.22-r1.24.diff 9452
+MD5 d48a142e1417f848fa512a1aa45e3b10 cad.f-r1.70-r1.72.diff 12196
+RMD160 a18c339223c8a6a66fda4cb210f2e533fea0d240 cad.f-r1.70-r1.72.diff 12196
+SHA256 ba10591643f93fb310d451aacce286d8ec9386f2e781d631f794076d1021539f cad.f-r1.70-r1.72.diff 12196
+MD5 bd3ff43388b58841de79bcc23ebf81e3 ccp4-6.0.1-core-src.tar.gz 59311291
+RMD160 0f514fe30f22a4f6eb2e05c8bab567d2132e8fae ccp4-6.0.1-core-src.tar.gz 59311291
+SHA256 26a5704d707c3bc2fbe4c1d0804abccc1c50255005d26a8ec3a03fcba63335f2 ccp4-6.0.1-core-src.tar.gz 59311291
+MD5 99247535ed72ddd60f715388a8bb9cc6 chainsaw.cpp-11May2006.diff 4720
+RMD160 62c3b3a3da0d36aa8f0c67a55c068508858eeb17 chainsaw.cpp-11May2006.diff 4720
+SHA256 de2d2ccd365f2992e1ba9a385f1a2fcd9e52da5ff96bcbc4fa7b4404cf0bac6e chainsaw.cpp-11May2006.diff 4720
+MD5 dcb1dea5587990b19d5ad5b095919905 contact.f-12June2006.diff 43051
+RMD160 577b454ed229be8c9b79e8c4622c870d589e2cca contact.f-12June2006.diff 43051
+SHA256 1336ea01da83aad21669b82cd3895f724db6db8d17d78acfec53154ea7ce690e contact.f-12June2006.diff 43051
+MD5 193b367d9b0e5567ce59f5c4b0118ec4 molrep.f-r1.28-r1.28.2.1.diff 755
+RMD160 96a37ea54606583647ff9cdc9da728ce05d30849 molrep.f-r1.28-r1.28.2.1.diff 755
+SHA256 0bb22cb2f8e1486ec5cc6037427e9ec66189684d74b5939757b4ebe771a61084 molrep.f-r1.28-r1.28.2.1.diff 755
+MD5 7007d645629a666e16161bfe9ce45cfc mtztona4.f-r1.23-r1.24.diff 882
+RMD160 1b34c6caaf5356574f65f2d092196cdd788cb720 mtztona4.f-r1.23-r1.24.diff 882
+SHA256 d7cf1b6ab2015b18c6b4b310e25b706a1f420d623383c17d0b51acfb00ae679a mtztona4.f-r1.23-r1.24.diff 882
+MD5 35e064c2e674abf496cda9546858218b omit.f-r1.12-r1.13.diff 2303
+RMD160 5dda121b69fdc3b4e138e0b88012df1d46398d3a omit.f-r1.12-r1.13.diff 2303
+SHA256 14a8128809f78d2d08b81cde5f91b51a694d99b56215477a62571344024a6748 omit.f-r1.12-r1.13.diff 2303
+MD5 7a3cb3be5eb751c26d524d6e6b7d3afa refmac5.tcl-r1.39.2.3-r1.42.diff 2464
+RMD160 fca236184597ab86fc9ac7333834e68eab641dac refmac5.tcl-r1.39.2.3-r1.42.diff 2464
+SHA256 8418181bae8799d2fa5a004e84cb1c66391d0cb768df5d40b34e053aced6fd4c refmac5.tcl-r1.39.2.3-r1.42.diff 2464
+MD5 de8c82181951b3579a160932ae8ddedd rotmat.f-17July2006.diff 1002
+RMD160 59cc822edbdc73b24e51cff013c71e4d68927979 rotmat.f-17July2006.diff 1002
+SHA256 1ee4f3288dba6404d59f51b9f9e1b4475413f7e40991204ab39474ee559605b1 rotmat.f-17July2006.diff 1002
+MD5 b966473250ed75716cc88cf0aee67348 sc.f-r1.9-r1.9.2.1.diff 8783
+RMD160 815d25cff0fa76f73dc43da9757ad753ec392f9c sc.f-r1.9-r1.9.2.1.diff 8783
+SHA256 418feea2ccf0014c3c2c83ab9460873114057480fd2a1dcabe305a1b956ad86b sc.f-r1.9-r1.9.2.1.diff 8783
+MD5 fb9252300a46f3d81776661b39c00d4e setup.fh-r1.5-r1.5.2.1.diff 1317
+RMD160 45a16b00792706553e7bf23a2f54415cd5ee1b43 setup.fh-r1.5-r1.5.2.1.diff 1317
+SHA256 637564c5723fb7de04d3a06817eec704ac708b74264716905690250e42aed146 setup.fh-r1.5-r1.5.2.1.diff 1317