sci-chemistry/vmd: Bumped to EAPI=4; use domenu; drop old

(Portage version: 2.2.0_alpha124/cvs/Linux x86_64)

4 files changed, 24 insertions, 404 deletions

diff --git a/sci-chemistry/vmd/ChangeLog b/sci-chemistry/vmd/ChangeLog
index c913d8bc0e1d..5e38af9075bd 100644
--- a/sci-chemistry/vmd/ChangeLog
+++ b/sci-chemistry/vmd/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/vmd
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.46 2012/02/14 15:26:56 alexxy Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.47 2012/09/05 07:00:23 jlec Exp $
+
+  05 Sep 2012; Justin Lecher <jlec@gentoo.org> -vmd-1.8.7-r2.ebuild,
+  -vmd-1.9.ebuild, vmd-1.9.1.ebuild:
+  Bumped to EAPI=4; use domenu; drop old
 
   14 Feb 2012; Alexey Shvetsov <alexxy@gentoo.org> vmd-1.9.1.ebuild:
   Fix plugin install
diff --git a/sci-chemistry/vmd/vmd-1.8.7-r2.ebuild b/sci-chemistry/vmd/vmd-1.8.7-r2.ebuild
deleted file mode 100644
index a1f7bc58c08a..000000000000
--- a/sci-chemistry/vmd/vmd-1.8.7-r2.ebuild
+++ /dev/null
@@ -1,184 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.7-r2.ebuild,v 1.10 2011/06/15 08:29:15 jlec Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-
-inherit eutils multilib python toolchain-funcs
-
-DESCRIPTION="Visual Molecular Dynamics"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="
-	mirror://gentoo/${P}-gentoo-patches.tar.xz
-	${P}.src.tar.gz"
-
-SLOT="0"
-LICENSE="vmd"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="msms povray tachyon"
-
-RESTRICT="fetch"
-
-# currently, tk-8.5* with USE=truetype breaks some
-# tk apps such as Sequence Viewer or Timeline.
-DEPEND="
-	|| (
-		>=dev-lang/tk-8.5[-truetype]
-		=dev-lang/tk-8.4*
-	)
-	dev-lang/perl
-	dev-python/numpy
-	sci-libs/netcdf
-	virtual/opengl
-	>=x11-libs/fltk-1.1.10-r2:1
-	x11-libs/libXft"
-
-RDEPEND="${DEPEND}
-	sci-biology/stride
-	x11-terms/xterm
-	msms? ( sci-chemistry/msms-bin )
-	povray? ( media-gfx/povray )
-	tachyon? ( media-gfx/tachyon )"
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-# Binary only plugin!!
-QA_TEXTRELS="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-QA_PRESTRIPPED="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-QA_DT_HASH_amd64="usr/lib64/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-QA_DT_HASH_x86="usr/lib/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-
-pkg_nofetch() {
-	elog "Please download ${P}.src.tar.gz from"
-	elog "${VMD_DOWNLOAD}"
-	elog "after agreeing to the license and then move it to "
-	elog "${DISTDIR}"
-
-}
-
-src_prepare() {
-	# apply LINUX-arch patches to vmd configure
-	cd "${WORKDIR}" && epatch "${WORKDIR}/${P}-gentoo.patch"
-
-	# prepare the plugins
-	cd "${WORKDIR}"/plugins
-
-	sed -e "s:CC = gcc:CC = $(tc-getCC):" \
-		-e "s:CXX = g++:CXX = $(tc-getCXX):" \
-		-e "s:COPTO =.*\":COPTO = -fPIC -o\":" \
-		-e "s:LOPTO = .*\":LOPTO = ${LDFLAGS} -fPIC -o\":" \
-		-e "s:CCFLAGS =.*\":CCFLAGS = ${CFLAGS}\":" \
-		-e "s:CXXFLAGS =.*\":CXXFLAGS = ${CXXFLAGS}\":" \
-		-e "s:SHLD = gcc:SHLD = $(tc-getCC):" \
-		-e "s:-ltcl8.5:-ltcl:" \
-		-i Make-arch || die "Failed to set up plugins Makefile"
-
-	# prepare vmd itself
-	cd "${S}"
-
-	# PREFIX
-	sed \
-		-e "s:/usr/include/:${EPREFIX}/usr/include:g" \
-		-i configure || die
-
-	sed -e "s:gentoo-bindir:${ED}/usr/bin:" \
-		-e "s:gentoo-libdir:${ED}/usr/$(get_libdir):" \
-		-i configure || die "failed to adjust install paths"
-
-	sed -e "s:gentoo-opengl-include:${EPREFIX}/usr/include/GL:" \
-		-e "s:gentoo-opengl-libs:${EPREFIX}/usr/$(get_libdir):" \
-		-i configure || die "failed to adjust OpenGL paths"
-
-	sed -e "s:gentoo-gcc:$(tc-getCC):" \
-		-e "s:gentoo-g++:$(tc-getCXX):" \
-		-e "s:gentoo-cflags:${CFLAGS}:" \
-		-e "s:gentoo-cxxflags:${CXXFLAGS}:" \
-		-e "s:gentoo-ldflags:${LDFLAGS}:g" \
-		-i configure || die "Failed to adjust C compiler/flags"
-
-	sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
-		-i configure || die "Failed to set up linking to plugin files"
-
-	sed -e "s:gentoo-fltk-include:$(fltk-config --includedir):" \
-		-e "s:gentoo-fltk-libs:$(dirname $(fltk-config --libs)) -Wl,-rpath,$(dirname $(fltk-config --libs)):" \
-		-i configure || die "failed setting up fltk"
-
-	sed -e "s:gentoo-netcdf-include:${EPREFIX}/usr/include:" \
-		-e "s:gentoo-netcdf-libs:${EPREFIX}/usr/$(get_libdir):" \
-		-i configure || die "failed to set up netcdf"
-
-	local NUMPY_INCLUDE="numpy/core/include"
-	sed -e "s:gentoo-python-include:${EPREFIX}$(python_get_includedir):" \
-		-e "s:gentoo-python-lib:${EPREFIX}$(python_get_libdir):" \
-		-e "s:gentoo-python-link:$(PYTHON):" \
-		-e "s:gentoo-numpy-include:${EPREFIX}$(python_get_sitedir)/${NUMPY_INCLUDE}:" \
-		-i configure || die "failed setting up python"
-
-	sed -e "s:LINUXPPC:LINUX:g" \
-		-e "s:LINUXALPHA:LINUX:g" \
-		-e "s:LINUXAMD64:LINUX:g" \
-		-i "${S}"/bin/vmd.sh || die "failed setting up vmd wrapper script"
-}
-
-src_configure() {
-	local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF NUMPY NOSILENT"
-	rm -f configure.options && echo $myconfig >> configure.options
-
-	./configure &> /dev/null || die "failed to configure"
-}
-
-src_compile() {
-	# build plugins
-	cd "${WORKDIR}"/plugins
-
-	emake -j1 \
-		LINUX TCLINC="-I${EPREFIX}/usr/include" \
-		TCLLIB="-L${EPREFIX}/usr/$(get_libdir)" \
-		NETCDFLIB="-L${EPREFIX}/usr/$(get_libdir)" \
-		NETCDFINC="-I${EPREFIX}/usr/include" \
-		NETCDFLDFLAGS="-lnetcdf" \
-		|| die "failed to build plugins"
-
-	# build vmd
-	cd "${S}"/src
-	emake || die "failed to build vmd"
-}
-
-src_install() {
-	# install plugins
-	cd "${WORKDIR}"/plugins
-	PLUGINDIR="${ED}/usr/$(get_libdir)/${PN}/plugins" make distrib || \
-		die "failed to install plugins"
-
-	# install vmd
-	cd "${S}"/src
-	make install || die "failed to install vmd"
-
-	# export STRIDE_BIN so VMD knows where to find stride
-	echo "STRIDE_BIN=${EPREFIX}/usr/bin/stride" > "${T}"/99${PN} || \
-		die "Failed to create vmd env file"
-	doenvd "${T}"/99${PN} || die "Failed to install vmd env file"
-
-	# install docs
-	cd "${S}"
-	dodoc Announcement README doc/ig.pdf doc/ug.pdf || die
-
-	# remove some of the things we don't want and need in
-	# /usr/lib
-	cd "${ED}"/usr/$(get_libdir)/vmd
-	rm -fr doc README Announcement LICENSE || \
-		die "failed to clean up /usr/lib/vmd directory"
-
-	# adjust path in vmd wrapper
-	sed \
-		-e "s:${ED}::" -i "${ED}"/usr/bin/${PN} \
-		-e "/^defaultvmddir/s:^.*$:defaultvmddir=\"${EPREFIX}/usr/$(get_libdir)/${PN}\":g" \
-		|| die "failed to set up vmd wrapper script"
-
-	# install icon and generate desktop entry
-	insinto /usr/share/pixmaps
-	doins "${WORKDIR}"/vmd.png || die "Failed to install vmd icon"
-	insinto /usr/share/applications
-	doins "${WORKDIR}"/vmd.desktop || die "Failed to install desktop entry"
-}
diff --git a/sci-chemistry/vmd/vmd-1.9.1.ebuild b/sci-chemistry/vmd/vmd-1.9.1.ebuild
index 5991764ff41e..8d66004216f2 100644
--- a/sci-chemistry/vmd/vmd-1.9.1.ebuild
+++ b/sci-chemistry/vmd/vmd-1.9.1.ebuild
@@ -1,8 +1,8 @@
 # Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.9.1.ebuild,v 1.2 2012/02/14 15:26:56 alexxy Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.9.1.ebuild,v 1.3 2012/09/05 07:00:23 jlec Exp $
 
-EAPI="3"
+EAPI=4
 
 PYTHON_DEPEND="2"
 
@@ -51,8 +51,12 @@ VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageNa
 # Binary only plugin!!
 QA_TEXTRELS="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
 QA_PRESTRIPPED="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-QA_DT_HASH_amd64="usr/lib64/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-QA_DT_HASH_x86="usr/lib/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
+QA_DT_HASH_amd64="
+	usr/lib64/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so
+	usr/lib64/vmd/plugins/LINUX/tcl/volutil1.3/volutil"
+QA_DT_HASH_x86="
+	usr/lib/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so
+	usr/lib/vmd/plugins/LINUX/tcl/volutil1.3/volutil"
 
 pkg_nofetch() {
 	elog "Please download ${P}.src.tar.gz from"
@@ -69,7 +73,8 @@ src_prepare() {
 
 	[[ ${SILENT} == yes ]] || sed '/^.SILENT/d' -i $(find -name Makefile)
 
-	sed -e "s:CC = gcc:CC = $(tc-getCC):" \
+	sed \
+		-e "s:CC = gcc:CC = $(tc-getCC):" \
 		-e "s:CXX = g++:CXX = $(tc-getCXX):" \
 		-e "s:COPTO =.*\":COPTO = -fPIC -o\":" \
 		-e "s:LOPTO = .*\":LOPTO = ${LDFLAGS} -fPIC -o\":" \
@@ -80,7 +85,8 @@ src_prepare() {
 		-e "s:-ltcl8.5:-ltcl:" \
 		-i Make-arch || die "Failed to set up plugins Makefile"
 
-	sed -e "s:\$(CXXFLAGS)::g" \
+	sed \
+		-e "s:\$(CXXFLAGS)::g" \
 		-i hesstrans/Makefile || die
 
 	# prepare vmd itself
@@ -168,11 +174,11 @@ src_compile() {
 		NETCDFLIB="$(pkg-config --libs-only-L netcdf)" \
 		NETCDFINC="$(pkg-config --cflags-only-I netcdf)" \
 		NETCDFLDFLAGS="$(pkg-config --libs netcdf)" \
-		LINUX || die
+		LINUX
 
 	# build vmd
 	cd "${S}"/src
-	emake || die "failed to build vmd"
+	emake
 }
 
 src_install() {
@@ -180,15 +186,15 @@ src_install() {
 	cd "${WORKDIR}"/plugins
 	emake \
 			PLUGINDIR="${ED}/usr/$(get_libdir)/${PN}/plugins" \
-			distrib || die "failed to install plugins"
+			distrib
 
 	# install vmd
 	cd "${S}"/src
-	emake install || die "failed to install vmd"
+	emake install
 
 	# install docs
 	cd "${S}"
-	dodoc Announcement README doc/ig.pdf doc/ug.pdf || die
+	dodoc Announcement README doc/ig.pdf doc/ug.pdf
 
 	# remove some of the things we don't want and need in
 	# /usr/lib
@@ -204,7 +210,6 @@ src_install() {
 
 	# install icon and generate desktop entry
 	insinto /usr/share/pixmaps
-	doins "${WORKDIR}"/vmd.png || die "Failed to install vmd icon"
-	insinto /usr/share/applications
-	doins "${WORKDIR}"/vmd.desktop || die "Failed to install desktop entry"
+	doins "${WORKDIR}"/vmd.png
+	domenu "${WORKDIR}"/vmd.desktop
 }
diff --git a/sci-chemistry/vmd/vmd-1.9.ebuild b/sci-chemistry/vmd/vmd-1.9.ebuild
deleted file mode 100644
index 154e4827ce0d..000000000000
--- a/sci-chemistry/vmd/vmd-1.9.ebuild
+++ /dev/null
@@ -1,205 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.9.ebuild,v 1.8 2012/01/10 14:44:42 jlec Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-
-inherit eutils multilib python toolchain-funcs
-
-DESCRIPTION="Visual Molecular Dynamics"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="
-	mirror://gentoo/${P}-gentoo-patches.tar.xz
-	${P}.src.tar.gz"
-
-SLOT="0"
-LICENSE="vmd"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="cuda msms povray tachyon xinerama"
-
-RESTRICT="fetch"
-
-# currently, tk-8.5* with USE=truetype breaks some
-# tk apps such as Sequence Viewer or Timeline.
-CDEPEND="
-	|| (
-		>=dev-lang/tk-8.5[-truetype]
-		=dev-lang/tk-8.4*
-	)
-	dev-lang/perl
-	dev-python/numpy
-	sci-libs/netcdf
-	virtual/opengl
-	>=x11-libs/fltk-1.1.10-r2:1
-	x11-libs/libXft
-	x11-libs/libXi
-	cuda? ( >=dev-util/nvidia-cuda-toolkit-3.1 )
-	xinerama? ( x11-libs/libXinerama )"
-DEPEND="${CDEPEND}
-	dev-lang/swig"
-RDEPEND="${CDEPEND}
-	sci-biology/stride
-	sci-chemistry/surf
-	x11-terms/xterm
-	msms? ( sci-chemistry/msms-bin )
-	povray? ( media-gfx/povray )
-	tachyon? ( media-gfx/tachyon )"
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-# Binary only plugin!!
-QA_TEXTRELS="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-QA_PRESTRIPPED="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-QA_DT_HASH_amd64="usr/lib64/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-QA_DT_HASH_x86="usr/lib/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
-
-pkg_nofetch() {
-	elog "Please download ${P}.src.tar.gz from"
-	elog "${VMD_DOWNLOAD}"
-	elog "after agreeing to the license and get"
-	elog "http://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz"
-	elog "Place both in ${DISTDIR}"
-}
-
-src_prepare() {
-	cd "${WORKDIR}"/plugins
-
-	epatch "${WORKDIR}"/${P}-gentoo-plugins.patch
-
-	[[ ${SILENT} == yes ]] || sed '/^.SILENT/d' -i $(find -name Makefile)
-
-	sed -e "s:CC = gcc:CC = $(tc-getCC):" \
-		-e "s:CXX = g++:CXX = $(tc-getCXX):" \
-		-e "s:COPTO =.*\":COPTO = -fPIC -o\":" \
-		-e "s:LOPTO = .*\":LOPTO = ${LDFLAGS} -fPIC -o\":" \
-		-e "s:CCFLAGS =.*\":CCFLAGS = ${CFLAGS}\":" \
-		-e "s:CXXFLAGS =.*\":CXXFLAGS = ${CXXFLAGS}\":" \
-		-e "s:SHLD = gcc:SHLD = $(tc-getCC) -shared:" \
-		-e "s:SHXXLD = g++:SHXXLD = $(tc-getCXX) -shared:" \
-		-e "s:-ltcl8.5:-ltcl:" \
-		-i Make-arch || die "Failed to set up plugins Makefile"
-
-	# prepare vmd itself
-	cd "${S}"
-
-	epatch "${WORKDIR}"/${P}-gentoo-base.patch
-
-	# PREFIX
-	sed \
-		-e "s:/usr/include/:${EPREFIX}/usr/include:g" \
-		-i configure || die
-
-	sed \
-		-e "s:gentoo-bindir:${ED}/usr/bin:g" \
-		-e "s:gentoo-libdir:${ED}/usr/$(get_libdir):g" \
-		-e "s:gentoo-opengl-include:${EPREFIX}/usr/include/GL:g" \
-		-e "s:gentoo-opengl-libs:${EPREFIX}/usr/$(get_libdir):g" \
-		-e "s:gentoo-gcc:$(tc-getCC):g" \
-		-e "s:gentoo-g++:$(tc-getCXX):g" \
-		-e "s:gentoo-nvcc:${EPREFIX}/opt/cuda/bin/nvcc:g" \
-		-e "s:gentoo-cflags:${CFLAGS}:g" \
-		-e "s:gentoo-cxxflags:${CXXFLAGS}:g" \
-		-e "s:gentoo-nvflags: -O3 -v:g" \
-		-e "s:gentoo-ldflags:${LDFLAGS}:g" \
-		-e "s:gentoo-plugindir:${WORKDIR}/plugins:g" \
-		-e "s:gentoo-fltk-include:$(fltk-config --includedir):g" \
-		-e "s:gentoo-fltk-libs:$(dirname $(fltk-config --libs)) -Wl,-rpath,$(dirname $(fltk-config --libs)):g" \
-		-e "s:gentoo-netcdf-include:${EPREFIX}/usr/include:g" \
-		-e "s:gentoo-netcdf-libs:${EPREFIX}/usr/$(get_libdir):g" \
-		-i configure || die
-
-#	local NUMPY_INCLUDE="numpy/core/include"
-#	sed -e "s:gentoo-python-include:${EPREFIX}$(python_get_includedir):" \
-#		-e "s:gentoo-python-lib:${EPREFIX}$(python_get_libdir):" \
-#		-e "s:gentoo-python-link:$(PYTHON):" \
-#		-e "s:gentoo-numpy-include:${EPREFIX}$(python_get_sitedir)/${NUMPY_INCLUDE}:" \
-#		-i configure || die "failed setting up python"
-
-	local gcc44_bindir="$(ls -d ${EPREFIX}/usr/*pc-linux-gnu/gcc-bin/4.4*)"
-
-	sed \
-		-e "s:gentoo-cuda-lib:${EPREFIX}/opt/cuda/$(get_libdir):g" \
-		-e "/^\$arch_nvccflags/s:=:= \"--compiler-bindir=${gcc44_bindir} \" . \n:1" \
-		-i configure || die
-
-	sed \
-		-e "s:LINUXPPC:LINUX:g" \
-		-e "s:LINUXALPHA:LINUX:g" \
-		-e "s:LINUXAMD64:LINUX:g" \
-		-e "s:gentoo-stride:${EPREFIX}/usr/bin/stride:g" \
-		-e "s:gentoo-surf:${EPREFIX}/usr/bin/surf:g" \
-		-e "s:gentoo-tachyon:${EPREFIX}/usr/bin/tachyon:g" \
-		-i "${S}"/bin/vmd.sh || die "failed setting up vmd wrapper script"
-}
-
-src_configure() {
-	local myconf="OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF NUMPY NOSILENT XINPUT"
-	rm -f configure.options && echo $myconf >> configure.options
-
-	use cuda && myconf+=" CUDA"
-#	use mpi && myconf+=" MPI"
-#	use tachion && myconf+=" LIBTACHYON"
-	use xinerama && myconf+=" XINERAMA"
-
-	export \
-		PYTHON_INCLUDE_DIR="${EPREFIX}$(python_get_includedir)" \
-		PYTHON_LIBRARY_DIR="${EPREFIX}$(python_get_libdir)" \
-		PYTHON_LIBRARY="$(python_get_library -l)" \
-		NUMPY_INCLUDE_DIR="${EPREFIX}$(python_get_sitedir)/numpy/core/include" \
-		NUMPY_LIBRARY_DIR="${EPREFIX}$(python_get_sitedir)/numpy/core/include"
-
-	./configure LINUX \
-		${myconf} || die
-}
-
-src_compile() {
-	# build plugins
-	cd "${WORKDIR}"/plugins
-
-	emake \
-		TCLINC="-I${EPREFIX}/usr/include" \
-		TCLLIB="-L${EPREFIX}/usr/$(get_libdir)" \
-		NETCDFLIB="$(pkg-config --libs-only-L netcdf)" \
-		NETCDFINC="$(pkg-config --cflags-only-I netcdf)" \
-		NETCDFLDFLAGS="$(pkg-config --libs netcdf)" \
-		LINUX || die
-
-	# build vmd
-	cd "${S}"/src
-	emake || die "failed to build vmd"
-}
-
-src_install() {
-	# install plugins
-	cd "${WORKDIR}"/plugins
-	emake \
-			PLUGINDIR="${ED}/usr/$(get_libdir)/${PN}/plugins" \
-			distrib || die "failed to install plugins"
-
-	# install vmd
-	cd "${S}"/src
-	emake install || die "failed to install vmd"
-
-	# install docs
-	cd "${S}"
-	dodoc Announcement README doc/ig.pdf doc/ug.pdf || die
-
-	# remove some of the things we don't want and need in
-	# /usr/lib
-	cd "${ED}"/usr/$(get_libdir)/vmd
-	rm -fr doc README Announcement LICENSE || \
-		die "failed to clean up /usr/lib/vmd directory"
-
-	# adjust path in vmd wrapper
-	sed \
-		-e "s:${ED}::" -i "${ED}"/usr/bin/${PN} \
-		-e "/^defaultvmddir/s:^.*$:defaultvmddir=\"${EPREFIX}/usr/$(get_libdir)/${PN}\":g" \
-		|| die "failed to set up vmd wrapper script"
-
-	# install icon and generate desktop entry
-	insinto /usr/share/pixmaps
-	doins "${WORKDIR}"/vmd.png || die "Failed to install vmd icon"
-	insinto /usr/share/applications
-	doins "${WORKDIR}"/vmd.desktop || die "Failed to install desktop entry"
-}