sci-chemistry/theseus: Version Bump

(Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

2 files changed, 71 insertions, 1 deletions

diff --git a/sci-chemistry/theseus/ChangeLog b/sci-chemistry/theseus/ChangeLog
index 574895deb390..01af5f940c19 100644
--- a/sci-chemistry/theseus/ChangeLog
+++ b/sci-chemistry/theseus/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/theseus
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/ChangeLog,v 1.6 2013/04/24 10:21:00 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/ChangeLog,v 1.7 2013/05/29 06:13:10 jlec Exp $
+
+*theseus-2.0.3 (29 May 2013)
+
+  29 May 2013; Justin Lecher <jlec@gentoo.org> +theseus-2.0.3.ebuild:
+  Version Bump
 
 *theseus-2.0.1-r1 (24 Apr 2013)
 
diff --git a/sci-chemistry/theseus/theseus-2.0.3.ebuild b/sci-chemistry/theseus/theseus-2.0.3.ebuild
new file mode 100644
index 000000000000..b0f2b5a7a633
--- /dev/null
+++ b/sci-chemistry/theseus/theseus-2.0.3.ebuild
@@ -0,0 +1,65 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/theseus-2.0.3.ebuild,v 1.1 2013/05/29 06:13:10 jlec Exp $
+
+EAPI=5
+
+inherit multilib toolchain-funcs
+
+DESCRIPTION="maximum likelihood superpositioning and analysis of macromolecular structures"
+HOMEPAGE="http://www.theseus3d.org/"
+SRC_URI="http://www.theseus3d.org/src/${PN}_${PV}.tar.gz"
+
+SLOT="0"
+LICENSE="GPL-3"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND="
+	sci-libs/gsl
+	|| (
+		sci-biology/probcons
+		sci-biology/mafft
+		sci-biology/t-coffee
+		sci-biology/kalign
+		sci-biology/clustalw
+		sci-biology/muscle
+		)"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+S="${WORKDIR}"/${PN}_src/
+
+src_prepare() {
+	cat >> make.inc <<- EOF
+	ARCH = $(tc-getAR)
+	ARCHFLAGS = -rvs
+	RANLIB = $(tc-getRANLIB)
+	LOCALLIBDIR = "${EPREFIX}/usr/$(get_libdir)
+	SYSLIBS = $(pkg-config --libs gsl) -lpthread
+	LIBS = -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus
+	LIBDIR = -L./lib
+	INSTALLDIR = "${ED}"/usr/bin
+	OPT =
+	WARN =
+	CFLAGS = ${CFLAGS} \$(WARN)
+	CC = $(tc-getCC)
+	EOF
+
+	sed \
+		-e 's|theseus:|theseus: libs|g' \
+		-e '/-o theseus/s:$(CC):$(CC) ${LDFLAGS}:g' \
+		-i Makefile || die
+
+	sed \
+		-e 's:/usr/bin/sed:sed:g' \
+		-e "s:/usr/local/bin/:${EPREFIX}/usr/bin/:g" \
+		-e "s:/usr/bin/:${EPREFIX}/usr/bin/:g" \
+		-i theseus_align || die
+}
+
+src_install() {
+	dobin theseus theseus_align
+	dodoc theseus_man.pdf README AUTHORS
+	use examples && insinto /usr/share/${PN} && doins -r examples
+}