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| author |   Justin Lecher <jlec@gentoo.org> | 2010-02-02 22:43:56 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2010-02-02 22:43:56 +0000 |
| commit | ae11957f8381b5d992c42b51d4e5db9addf72093 (patch) | |
| tree | 47f32bdf2cb136c3e226be87fba4a6d8e7a8c931 /sci-chemistry/refmac/files | |
| parent | Automated crystallographic structure solution for MIR, SAD, and MAD (diff) | |
| download | gentoo-2-ae11957f8381b5d992c42b51d4e5db9addf72093.tar.gz gentoo-2-ae11957f8381b5d992c42b51d4e5db9addf72093.tar.bz2 gentoo-2-ae11957f8381b5d992c42b51d4e5db9addf72093.zip | |
refmac splitted from ccp4 package
(Portage version: 2.2_rc62/cvs/Linux x86_64)
Diffstat (limited to 'sci-chemistry/refmac/files')
| -rw-r--r-- | sci-chemistry/refmac/files/5.5-allow-dynamic-linking.patch | 66 | ||||
| -rw-r--r-- | sci-chemistry/refmac/files/5.5-test.log.patch | 32 |
2 files changed, 98 insertions, 0 deletions
diff --git a/sci-chemistry/refmac/files/5.5-allow-dynamic-linking.patch b/sci-chemistry/refmac/files/5.5-allow-dynamic-linking.patch new file mode 100644 index 000000000000..415ba9d08cb0 --- /dev/null +++ b/sci-chemistry/refmac/files/5.5-allow-dynamic-linking.patch @@ -0,0 +1,66 @@ +--- makefile_refmac.inc1.orig 2008-08-01 22:17:14.000000000 -0700 ++++ makefile_refmac.inc1 2008-08-01 22:18:46.000000000 -0700 +@@ -69,9 +69,7 @@ + bridge.o \ + i0.o \ + i1.o \ +-chbevl.o \ +-$(LLIBCIF) \ +-$(LLIBLAPACK) ++chbevl.o + #$(LLIBCCP) \ + #crt0.o \ + +@@ -95,8 +93,7 @@ + emin.o \ + libcheck_min.o \ + mol2_file.o \ +-sdf_files.o \ +-$(LLIBCCP) ++sdf_files.o + + SUBM = \ + main_makecif.o \ +@@ -116,9 +113,7 @@ + make_PDB.o \ + makecif.o \ + make_unix_ccp4.o \ +-make_vdw.o \ +-$(LLIBCCP) \ +-$(LLIBCIF) ++make_vdw.o + + SUBT = \ + tlsgroups.o \ +@@ -142,9 +137,7 @@ + inout_routines.o \ + errwrt_1.o \ + linalgebra.o \ +-subnumrec.o \ +-$(LLIBCCP) \ +-$(LLIBCIF) ++subnumrec.o + #-------------------------------------------------------------------------------- + + ed = echo 'g/^CMDW-5.0/s// /@w@q@' | tr "@" "\012" | ed -s +@@ -154,16 +147,16 @@ + all: refmac libcheck makecif + + refmac: $(SUBR) +- $(FC) $(FFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) ++ $(FC) $(FFLAGS) $(LDFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK) + + libcheck: $(SUBL) +- $(FC) $(FFLAGS) -o libcheck${VERSION} $(SUBL) ++ $(FC) $(FFLAGS) $(LDFLAGS) -o libcheck${VERSION} $(SUBL) $(LLIBCCP) + + makecif: $(SUBM) +- $(FC) $(FFLAGS) -o makecif${VERSION} $(SUBM) ++ $(FC) $(FFLAGS) $(LDFLAGS) -o makecif${VERSION} $(SUBM) $(LLIBCCP) $(LLIBCIF) + + tlsgroups: $(SUBT) +- $(FC) $(FFLAGS) -o tlsgroups${VERSION} $(SUBT) ++ $(FC) $(FFLAGS) $(LDFLAGS) -o tlsgroups${VERSION} $(SUBT) $(LLIBCCP) $(LLIBCIF) + + clean: + /bin/rm *.o diff --git a/sci-chemistry/refmac/files/5.5-test.log.patch b/sci-chemistry/refmac/files/5.5-test.log.patch new file mode 100644 index 000000000000..61858be357a0 --- /dev/null +++ b/sci-chemistry/refmac/files/5.5-test.log.patch @@ -0,0 +1,32 @@ +--- test-framework/refmac5/test_refmac5.py 2009-06-29 15:45:37.000000000 +0200 ++++ test-framework/refmac5/test_refmac5.py.new 2009-06-29 15:48:05.000000000 +0200 +@@ -88,7 +88,8 @@ + 'make hydr no', + 'labin IP=IMEAN SIGIP=SIGIMEAN FREE=FreeR_flag', + 'labout FC=FC PHIC=PHIC'], +- working_directory = self.test_dir) ++ working_directory = self.test_dir, ++ log_file = 'test_twinned_refinement.log') + + self.assertEqual(status, 0) + +@@ -123,7 +124,8 @@ + 'weight auto', + 'ncyc 20', + 'labout FC=FC PHIC=PHIC'], +- working_directory = self.test_dir) ++ working_directory = self.test_dir, ++ log_file = 'test_4_domain_tls.log') + + self.assertEqual(status, 0) + +@@ -156,7 +158,8 @@ + 'anomalous form SE -9.9 3.9', + 'anomalous wavelength 0.97966', + 'labout FC=FC PHIC=PHIC'], +- working_directory = self.test_dir) ++ working_directory = self.test_dir, ++ log_file = 'test_sad_refinement.log') + + self.assertEqual(status, 0) + |