Bump.

(Portage version: 2.1.2_rc2)

5 files changed, 532 insertions, 1 deletions

diff --git a/sci-chemistry/ccp4/ChangeLog b/sci-chemistry/ccp4/ChangeLog
index 00d667734a44..114f3215df60 100644
--- a/sci-chemistry/ccp4/ChangeLog
+++ b/sci-chemistry/ccp4/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-chemistry/ccp4
 # Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4/ChangeLog,v 1.6 2006/09/26 08:01:27 dberkholz Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4/ChangeLog,v 1.7 2006/11/24 10:45:41 dberkholz Exp $
+
+*ccp4-6.0.2 (24 Nov 2006)
+
+  24 Nov 2006; Donnie Berkholz <dberkholz@gentoo.org>;
+  +files/6.0.2-dont-make-dirs-in-configure.patch,
+  +files/6.0.2-ppc-double-define-gerror.patch, +ccp4-6.0.2.ebuild:
+  Bump.
 
   26 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; ccp4-6.0.1-r1.ebuild:
   Stable on x86/ppc.
diff --git a/sci-chemistry/ccp4/ccp4-6.0.2.ebuild b/sci-chemistry/ccp4/ccp4-6.0.2.ebuild
new file mode 100644
index 000000000000..092ff624ea02
--- /dev/null
+++ b/sci-chemistry/ccp4/ccp4-6.0.2.ebuild
@@ -0,0 +1,423 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4/ccp4-6.0.2.ebuild,v 1.1 2006/11/24 10:45:41 dberkholz Exp $
+
+inherit fortran eutils gnuconfig toolchain-funcs
+
+FORTRAN="g77 gfortran ifc"
+
+SRC="ftp://ftp.ccp4.ac.uk/ccp4"
+
+PATCH_TOT="0"
+#PATCH1=( src/mmdb_app_
+#	chainsaw.cpp-11May2006.diff )
+#PATCH2=( src
+#	anisoanl.f-r1.22-r1.24.diff )
+
+DESCRIPTION="Protein X-ray crystallography toolkit"
+HOMEPAGE="http://www.ccp4.ac.uk/"
+RESTRICT="mirror stricter"
+SRC_URI="${SRC}/${PV}/source/${P}-core-src.tar.gz"
+for i in $(seq $PATCH_TOT); do
+	NAME="PATCH${i}[1]"
+	SRC_URI="${SRC_URI}
+		${SRC}/${PV}/patches/${!NAME}"
+done
+LICENSE="ccp4"
+SLOT="0"
+KEYWORDS="~ppc ~x86"
+IUSE="X"
+# app-office/sc overlaps sc binary and man page
+# We can't rename ours since the automated ccp4i interface expects it there,
+# as do many scripts. app-office/sc can't rename its because that's the name
+# of the package.
+RDEPEND="X? (
+				x11-libs/libX11
+				x11-libs/libXt
+				x11-libs/libXaw
+		)
+		>=dev-lang/tcl-8.3
+		>=dev-lang/tk-8.3
+		>=dev-tcltk/blt-2.4
+		virtual/lapack
+		virtual/blas
+		=sci-libs/fftw-2*
+		sci-chemistry/pdb-extract
+		sci-chemistry/rasmol
+		sci-libs/mccp4
+		|| ( app-shells/tcsh app-shells/csh )
+		!app-office/sc"
+# >=sys-apps/portage-2.1.1_pre1 for RESTRICT=stricter
+# Otherwise portage dies instead of fixing RPATHs
+DEPEND="${RDEPEND}
+		X? (
+				x11-misc/imake
+				x11-proto/inputproto
+				x11-proto/xextproto
+		)
+		>=sys-apps/portage-2.1.1_pre1"
+
+S="${WORKDIR}/${PN}-${PV}"
+
+src_unpack() {
+	unpack ${A}
+	cd ${S}
+
+	einfo "Applying upstream patches ..."
+	for patch in $(seq $PATCH_TOT); do
+		base="PATCH${patch}"
+		dir=$(eval echo \${${base}[0]})
+		p=$(eval echo \${${base}[1]})
+		pushd ${dir} >& /dev/null
+		ccp_patch ${DISTDIR}/${p}
+		popd >& /dev/null
+	done
+	einfo "Done."
+	echo
+
+	einfo "Applying Gentoo patches ..."
+	# These two only needed when attempting to install outside build dir via
+	# --bindir and --libdir instead of straight copying after build
+
+	# it attempts to install some libraries during the build
+	#ccp_patch ${FILESDIR}/${P}-install-libs-at-install-time.patch
+	# hklview/ipdisp.exe/xdlmapman/ipmosflm can't find libxdl_view
+	# without this patch when --libdir is set
+	# Rotgen still needs more patching to find it
+	#ccp_patch ${FILESDIR}/add-xdl-libdir.patch
+
+	# it tries to create libdir, bindir etc on live system in configure
+	ccp_patch ${FILESDIR}/${PV}-dont-make-dirs-in-configure.patch
+
+	# We already have sci-chemistry/rasmol
+	ccp_patch ${FILESDIR}/dont-build-rasmol.patch
+
+	# We already have sci-chemistry/pdb-extract
+# Use configure option instead
+#	ccp_patch ${FILESDIR}/dont-build-pdb-extract.patch
+
+	ccp_patch ${FILESDIR}/create-mosflm-bindir.patch
+	ccp_patch ${FILESDIR}/make-mosflm-libdir.patch
+	ccp_patch ${FILESDIR}/make-mosflm-index-libdir.patch
+	ccp_patch ${FILESDIR}/make-mosflm-cbf-libdir.patch
+	ccp_patch ${FILESDIR}/make-ipmosflm-dir.patch
+
+# Don't use these when we aren't building phaser
+#	ccp_patch ${FILESDIR}/make-phaser-bindir.patch
+#	ccp_patch ${FILESDIR}/no-phaser-ld-assume-kernel.patch
+#	# scons config.py tries to chmod python on live system
+#	ccp_patch ${FILESDIR}/dont-chmod-python-binary.patch
+
+	# Don't use this when we aren't building clipper
+	# For some reason clipper check for $enableval even when --enable is passed
+	ccp_patch ${FILESDIR}/pass-clipper-enablevals.patch
+	ccp_patch ${FILESDIR}/clipper-find-mccp4-includes.patch
+
+	# Default to firefox browser, not 'netscape'
+	ccp_patch ${FILESDIR}/ccp4i-default-to-firefox.patch
+
+	# Also use -lpthread when linking blas and lapack
+	# We may need more fixing to use libcblas for the C files
+	ccp_patch ${FILESDIR}/check-blas-lapack-pthread.patch
+
+	# gerror_ gets defined twice on ppc if you're using gfortran/g95
+	ccp_patch ${FILESDIR}/${PV}-ppc-double-define-gerror.patch
+
+	einfo "Done." # done applying Gentoo patches
+	echo
+
+	gnuconfig_update
+}
+
+src_compile() {
+	# Build system is broken if we set LDFLAGS
+	unset LDFLAGS
+
+	# GENTOO_OSNAME can be one of:
+	# irix irix64 sunos sunos64 aix hpux osf1 linux freebsd
+	# linux_compaq_compilers linux_intel_compilers generic Darwin
+	# ia64_linux_intel Darwin_ibm_compilers linux_ibm_compilers
+	if [[ "${FORTRANC}" = "ifc" ]]; then
+		if use ia64; then
+			GENTOO_OSNAME="ia64_linux_intel"
+		else
+			# Should be valid for x86, maybe amd64
+			GENTOO_OSNAME="linux_intel_compilers"
+		fi
+	else
+		# Should be valid for x86 and amd64, at least
+		GENTOO_OSNAME="linux"
+	fi
+
+	# Sets up env
+	ln -s \
+		ccp4.setup-bash \
+		${S}/include/ccp4.setup
+
+	# We agree to the license by emerging this, set in LICENSE
+	sed -i \
+		-e "s~^\(^agreed=\).*~\1yes~g" \
+		${S}/configure
+
+	# Fix up variables -- need to reset CCP4_MASTER at install-time
+	sed -i \
+		-e "s~^\(setenv CCP4_MASTER.*\)/.*~\1${WORKDIR}~g" \
+		-e "s~^\(setenv CCP4I_TCLTK.*\)/usr/local/bin~\1/usr/bin~g" \
+		${S}/include/ccp4.setup*
+
+	# Set up variables for build
+	source ${S}/include/ccp4.setup
+
+	export CC=$(tc-getCC)
+	export CXX=$(tc-getCXX)
+	export COPTIM=${CFLAGS}
+	export CXXOPTIM=${CXXFLAGS}
+	# Default to -O2 if FFLAGS is unset
+	export FC=${FORTRANC}
+	export FOPTIM=${FFLAGS:- -O2}
+
+	# Can't use econf, configure rejects unknown options like --prefix
+	./configure \
+		$(use_enable X x) \
+		--with-shared-libs \
+		--with-fftw=/usr \
+		--with-warnings \
+		--disable-pdb_extract \
+		--disable-cctbx \
+		--disable-phaser \
+		--tmpdir="${TMPDIR}" \
+		${GENTOO_OSNAME} || die "econf failed"
+	emake -j1 || die "emake failed"
+}
+
+src_install() {
+	# Set up variables for build
+	source ${S}/include/ccp4.setup
+
+# Only needed when using --bindir and --libdir
+	# Needed to avoid errors. Originally tried to make lib and bin
+	# in configure script, now patched out by dont-make-dirs-in-configure.patch
+#	dodir /usr/include /usr/$(get_libdir) /usr/bin
+
+#	make install || die "install failed"
+	einstall || die "install failed"
+
+	# Fix env
+	sed -i \
+		-e "s~^\(setenv CCP4_MASTER.*\)${WORKDIR}~\1/usr~g" \
+		-e "s~^\(setenv CCP4.*\$CCP4_MASTER\).*~\1~g" \
+		-e "s~^\(setenv CCP4I_TOP\).*~\1 \$CCP4/$(get_libdir)/ccp4/ccp4i~g" \
+		-e "s~^\(.*setenv CINCL.*\$CCP4\).*~\1/share/ccp4/include~g" \
+		-e "s~^\(.*setenv CLIBD .*\$CCP4\).*~\1/share/ccp4/data~g" \
+		-e "s~^\(.*setenv CLIBD_MON .*\)\$CCP4.*~\1\$CLIBD/monomers/~g" \
+		-e "s~^\(.*setenv MOLREPLIB .*\)\$CCP4.*~\1\$CLIBD/monomers/~g" \
+		-e "s~^\(.*setenv CCP4_BROWSER.*\).*~\1 firefox~g" \
+		${S}/include/ccp4.setup*
+
+	# Get rid of S instances
+	# Also the main clipper library is built as libclipper-core, not libclipper
+	sed -i \
+		-e "s:${S}:${ROOT}usr:g" \
+		-e "s:lclipper :lclipper-core :g" \
+		${S}/bin/clipper-config
+#	sed -i \
+#		-e "s:${S}:${ROOT}usr:g" \
+#		${S}/$(get_libdir)/cctbx/cctbx_build/setpaths*
+
+	# Bins
+	EXEDESTTREE="/usr/bin" doexe ${S}/bin/*
+
+	# Libs
+	for file in ${S}/lib/*; do
+		if [[ -d ${file} ]]; then
+			continue
+		elif [[ -x ${file} ]]; then
+			dolib.so ${file}
+		else
+			INSDESTTREE="/usr/$(get_libdir)" doins ${file}
+		fi
+	done
+
+	# Fix libdir in all *.la files
+	sed -i \
+		-e "s:^\(libdir=\).*:\1\'/usr/$(get_libdir)\':g" \
+		${D}/usr/$(get_libdir)/*.la
+
+	# Library symlinks
+	local LIBNAMES="libclipper-ccp4.so.0.0.0
+		libclipper-cif.so.0.0.0
+		libclipper-contrib.so.0.0.0
+		libclipper-core.so.0.0.0
+		libclipper-minimol.so.0.0.0
+		libclipper-mmdbold.so.0.0.0
+		libclipper-mmdb.so.0.0.0
+		libclipper-mtz.so.1.0.0
+		libclipper-phs.so.0.0.0
+		libjwc_c.so.0.1.1
+		libjwc_f.so.0.1.1
+		libssm.so.0.0.0
+		libxdl_viewextra.so.0.0.0
+		libxdl_view.so.2.0.0"
+
+	for LIBNAME in ${LIBNAMES}; do
+		library_dosym ${LIBNAME}
+	done
+
+#	dosym libclipper-ccp4.so.0.0.0 /usr/$(get_libdir)/libclipper-ccp4.so
+#	dosym libclipper-ccp4.so.0.0.0 /usr/$(get_libdir)/libclipper-ccp4.so.0
+#	dosym libclipper-ccp4.so.0.0.0 /usr/$(get_libdir)/libclipper-ccp4.so.0.0
+#
+#	dosym libclipper-cif.so.0.0.0 /usr/$(get_libdir)/libclipper-cif.so
+#	dosym libclipper-cif.so.0.0.0 /usr/$(get_libdir)/libclipper-cif.so.0
+#	dosym libclipper-cif.so.0.0.0 /usr/$(get_libdir)/libclipper-cif.so.0.0
+#
+#	dosym libclipper-contrib.so.0.0.0 /usr/$(get_libdir)/libclipper-contrib.so
+#	dosym libclipper-contrib.so.0.0.0 /usr/$(get_libdir)/libclipper-contrib.so.0
+#	dosym libclipper-contrib.so.0.0.0 /usr/$(get_libdir)/libclipper-contrib.so.0.0
+#
+#	dosym libclipper-core.so.0.0.0 /usr/$(get_libdir)/libclipper-core.so
+#	dosym libclipper-core.so.0.0.0 /usr/$(get_libdir)/libclipper-core.so.0
+#	dosym libclipper-core.so.0.0.0 /usr/$(get_libdir)/libclipper-core.so.0.0
+#
+#	dosym libclipper-minimol.so.0.0.0 /usr/$(get_libdir)/libclipper-minimol.so
+#	dosym libclipper-minimol.so.0.0.0 /usr/$(get_libdir)/libclipper-minimol.so.0
+#	dosym libclipper-minimol.so.0.0.0 /usr/$(get_libdir)/libclipper-minimol.so.0.0
+#
+#	dosym libclipper-mmdbold.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdbold.so
+#	dosym libclipper-mmdbold.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdbold.so.0
+#	dosym libclipper-mmdbold.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdbold.so.0.0
+#
+#	dosym libclipper-mmdb.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdb.so
+#	dosym libclipper-mmdb.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdb.so.0
+#	dosym libclipper-mmdb.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdb.so.0.0
+#
+#	dosym libclipper-mtz.so.1.0.0 /usr/$(get_libdir)/libclipper-mtz.so
+#	dosym libclipper-mtz.so.1.0.0 /usr/$(get_libdir)/libclipper-mtz.so.1
+#	dosym libclipper-mtz.so.1.0.0 /usr/$(get_libdir)/libclipper-mtz.so.1.0
+#
+#	dosym libclipper-phs.so.0.0.0 /usr/$(get_libdir)/libclipper-phs.so
+#	dosym libclipper-phs.so.0.0.0 /usr/$(get_libdir)/libclipper-phs.so.0
+#	dosym libclipper-phs.so.0.0.0 /usr/$(get_libdir)/libclipper-phs.so.0.0
+#
+#	dosym libjwc_c.so.0.1.1 /usr/$(get_libdir)/libjwc_c.so
+#	dosym libjwc_c.so.0.1.1 /usr/$(get_libdir)/libjwc_c.so.0
+#	dosym libjwc_c.so.0.1.1 /usr/$(get_libdir)/libjwc_c.so.0.1
+#
+#	dosym libjwc_f.so.0.1.1 /usr/$(get_libdir)/libjwc_f.so
+#	dosym libjwc_f.so.0.1.1 /usr/$(get_libdir)/libjwc_f.so.0
+#	dosym libjwc_f.so.0.1.1 /usr/$(get_libdir)/libjwc_f.so.0.1
+#
+#	dosym libssm.so.0.0.0 /usr/$(get_libdir)/libssm.so
+#	dosym libssm.so.0.0.0 /usr/$(get_libdir)/libssm.so.0
+#	dosym libssm.so.0.0.0 /usr/$(get_libdir)/libssm.so.0.0
+#
+#	dosym libxdl_viewextra.so.0.0.0 /usr/$(get_libdir)/libxdl_viewextra.so
+#	dosym libxdl_viewextra.so.0.0.0 /usr/$(get_libdir)/libxdl_viewextra.so.0
+#	dosym libxdl_viewextra.so.0.0.0 /usr/$(get_libdir)/libxdl_viewextra.so.0.0
+#
+#	dosym libxdl_view.so.2.0.0 /usr/$(get_libdir)/libxdl_view.so
+#	dosym libxdl_view.so.2.0.0 /usr/$(get_libdir)/libxdl_view.so.2
+#	dosym libxdl_view.so.2.0.0 /usr/$(get_libdir)/libxdl_view.so.2.0
+
+	# Environment files, setup scripts, etc.
+	INSDESTTREE="/usr/share/ccp4/include" doins ${S}/include/*
+
+	# CCP4Interface - GUI
+	INSDESTTREE="/usr/$(get_libdir)/ccp4" doins -r ${S}/ccp4i
+	EXEDESTTREE="/usr/$(get_libdir)/ccp4/ccp4i/bin" doexe ${S}/ccp4i/bin/*
+
+	# Data
+	INSDESTTREE="/usr/share/ccp4" doins -r ${S}/lib/data
+
+	# Include files
+	for i in ccp4 clipper mmdb ssm; do
+		INSDESTTREE="/usr/include" doins -r ${S}/include/${i}
+	done
+
+	# Install docs and examples
+
+	doman ${S}/man/cat1/*
+
+	mv ${S}/manual/README ${S}/manual/README-manual
+	dodoc ${S}/manual/*
+
+	dodoc ${S}/README ${S}/CHANGES
+
+	dodoc ${S}/doc/*
+	rm ${D}/usr/share/doc/${PF}/GNUmakefile.gz
+	rm ${D}/usr/share/doc/${PF}/COPYING.gz
+
+	dohtml -r ${S}/html/*
+	dodoc ${S}/examples/README
+
+	# Fix wrongly installed HTML pages from clipper
+	dohtml "${D}"/usr/html/*
+	rm -rf "${D}"/usr/html
+
+	for i in data rnase toxd; do
+		DOCDESTTREE="examples/${i}" dodoc ${S}/examples/${i}/*
+	done
+
+	DOCDESTTREE="examples/tutorial" dohtml -r ${S}/examples/tutorial/html
+	DOCDESTTREE="examples/tutorial" dohtml examples/tutorial/tut.css
+	for i in data results; do
+		DOCDESTTREE="examples/tutorial/${i}" dodoc ${S}/examples/tutorial/${i}/*
+	done
+
+	for i in non-runnable runnable; do
+		DOCDESTTREE="examples/unix/${i}" dodoc ${S}/examples/unix/${i}
+	done
+
+	# Needed for ccp4i docs to work
+	dosym ../../share/doc/${PF}/examples /usr/$(get_libdir)/ccp4/examples
+	dosym ../../share/doc/${PF}/html /usr/$(get_libdir)/ccp4/html
+
+	# Fix overlaps with other packages
+	rm ${D}/usr/share/man/man1/rasmol.1.gz
+}
+
+pkg_postinst() {
+	einfo "The Web browser defaults to firefox. Change CCP4_BROWSER"
+	einfo "in /usr/share/ccp4/include/ccp4.setup* to modify this."
+
+	ewarn "Set your .bashrc or other shell login file to source"
+	ewarn "one of the ccp4.setup* files in ${ROOT}usr/share/ccp4/include."
+	ewarn "CCP4 will not work without this."
+}
+
+# Epatch wrapper for bulk patching
+ccp_patch() {
+	EPATCH_SINGLE_MSG="  ${1##*/} ..." epatch ${1}
+}
+
+# Links libname.so, libname.so.major and libname.so.major.minor
+# to libname.so.major.minor.micro
+library_dosym() {
+	local LIBNAME LIBDIR SUFFIX CORE_LIBNAME LIB_MAJOR LIB_MINOR LIB_VERSIONS
+
+	LIBNAME=${1}
+	LIBDIR=${2:-/usr/$(get_libdir)}
+
+	# Tag / on the end of libdir if needed
+	if [[ ${LIBDIR:$((${#LIBDIR}-1)):1} != "/" ]]; then
+		LIBDIR="${LIBDIR}/"
+	fi
+
+	if [[ "${LIBNAME}" != *.so.* ]]; then
+		msg="library_dosym() requires a shared, versioned library as an argument"
+		eerror "$msg"
+		die "$msg"
+	fi
+
+	SUFFIX=${LIBNAME##*so.}
+	CORE_LIBNAME=${LIBNAME%.so.*}
+	CORE_LIBNAME="${CORE_LIBNAME}.so"
+	LIB_MAJOR=${SUFFIX%%.*}
+	LIB_MINOR=${SUFFIX#*.}
+	LIB_MINOR=${SUFFIX%%.*}
+	LIB_VERSIONS="${LIB_MAJOR} ${LIB_MAJOR}.${LIB_MINOR}"
+	for LIB_SUFFIX in .${LIB_MAJOR} .${LIB_MAJOR}.${LIB_MINOR} ""; do
+		einfo "Calling dosym ${LIBNAME} ${LIBDIR} ${CORE_LIBNAME} ${LIB_SUFFIX}"
+		dosym ${LIBNAME} ${LIBDIR}${CORE_LIBNAME}${LIB_SUFFIX}
+	done
+}
diff --git a/sci-chemistry/ccp4/files/6.0.2-dont-make-dirs-in-configure.patch b/sci-chemistry/ccp4/files/6.0.2-dont-make-dirs-in-configure.patch
new file mode 100644
index 000000000000..1420419ffab0
--- /dev/null
+++ b/sci-chemistry/ccp4/files/6.0.2-dont-make-dirs-in-configure.patch
@@ -0,0 +1,87 @@
+--- ccp4-6.0.1.orig/configure	2006-06-10 17:30:02.000000000 -0700
++++ ccp4-6.0.1/configure	2006-06-10 17:45:43.000000000 -0700
+@@ -623,45 +623,45 @@
+ #     echo "! Beware -- the $system installation isn't properly tested." ; }
+ syswarn='echo; echo "! Beware -- the $system installation is not properly tested."'
+ 
+-if test -z "$onlylibs" ; then 
+-   for i in CCP4_SCR BINSORT_SCR; do
+-     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
+-     else
+-       eval echo "! No directory \$$i and can\'t create it."
+-       echo "  Check the value of $i."
+-       badvar=1
+-     fi
+-   done
+-
+-   for i in libdir bindir; do
+-     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
+-     else
+-       eval echo "! No directory \$$i and can\'t create it."
+-       echo "  Check the argument of --$i."
+-       badvar=1
+-     fi
+-   done
+-
+-   for i in $dotsrc $dotunsupp $dotunsuppsrc ./lib ./lib/src ./lib/data ./ccp4i/etc/unix $mosflmdir/lib $mosflmdir/bin $mosflmdir/cbf/lib ; do
+-     if test -d $i || mkdir $i; then :
+-     else
+-       eval echo "! No directory $i and can\'t create it."
+-       badvar=1
+-     fi
+-   done
+-else
+-   # Kludge to fool the "Makefile" target in the top-level CCP4
+-   # Makefile into not trying to remake src/Makefile.in
+-   for i in $srcdir/src $srcdir/lib/src ; do
+-     if test -d $i || mkdir $i; then
+-       if ! test -f $i/Makefile.in ; then
+-         echo
+-         echo "onlylibs: making dummy file $i/Makefile.in"
+-	 touch $i/Makefile.in
+-       fi
+-     fi
+-   done
+-fi
++#if test -z "$onlylibs" ; then 
++#   for i in CCP4_SCR BINSORT_SCR; do
++#     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
++#     else
++#       eval echo "! No directory \$$i and can\'t create it."
++#       echo "  Check the value of $i."
++#       badvar=1
++#     fi
++#   done
++#
++#   for i in libdir bindir; do
++#     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
++#     else
++#       eval echo "! No directory \$$i and can\'t create it."
++#       echo "  Check the argument of --$i."
++#       badvar=1
++#     fi
++#   done
++#
++#   for i in $dotsrc $dotunsupp $dotunsuppsrc ./lib ./lib/src ./lib/data ./ccp4i/etc/unix $mosflmdir/lib $mosflmdir/bin $mosflmdir/cbf/lib ; do
++#     if test -d $i || mkdir $i; then :
++#     else
++#       eval echo "! No directory $i and can\'t create it."
++#       badvar=1
++#     fi
++#   done
++#else
++#   # Kludge to fool the "Makefile" target in the top-level CCP4
++#   # Makefile into not trying to remake src/Makefile.in
++#   for i in $srcdir/src $srcdir/lib/src ; do
++#     if test -d $i || mkdir $i; then
++#       if ! test -f $i/Makefile.in ; then
++#         echo
++#         echo "onlylibs: making dummy file $i/Makefile.in"
++#	 touch $i/Makefile.in
++#       fi
++#     fi
++#   done
++#fi
+ 
+ ### sanity checks
+ 
diff --git a/sci-chemistry/ccp4/files/6.0.2-ppc-double-define-gerror.patch b/sci-chemistry/ccp4/files/6.0.2-ppc-double-define-gerror.patch
new file mode 100644
index 000000000000..a77d9494a05c
--- /dev/null
+++ b/sci-chemistry/ccp4/files/6.0.2-ppc-double-define-gerror.patch
@@ -0,0 +1,11 @@
+--- ccp4-6.0.1.orig/lib/src/library_f.c	2006-06-12 07:06:22.000000000 -0700
++++ ccp4-6.0.1/lib/src/library_f.c	2006-06-12 07:21:56.000000000 -0700
+@@ -716,7 +716,7 @@
+ 
+ #endif /* end of apple xlf support */
+ 
+-#if ( defined (__linux__) && defined (_CALL_SYSV) )
++#if ( defined (__linux__) && defined (_CALL_SYSV) && ! defined(G95) && ! defined (GFORTRAN) )
+ /* linuxppc xlf support */
+ void gerror_ (str, Lstr)
+ char *str;
diff --git a/sci-chemistry/ccp4/files/digest-ccp4-6.0.2 b/sci-chemistry/ccp4/files/digest-ccp4-6.0.2
new file mode 100644
index 000000000000..2f4e81e11fb4
--- /dev/null
+++ b/sci-chemistry/ccp4/files/digest-ccp4-6.0.2
@@ -0,0 +1,3 @@
+MD5 a47ae8b8e6fa76eef7f17baa85e8dc16 ccp4-6.0.2-core-src.tar.gz 62286123
+RMD160 159c71c5079422d6e540e4678fb8e4f9f83fc99d ccp4-6.0.2-core-src.tar.gz 62286123
+SHA256 b8716198b4d5c1ad3aea190180a5c56e0e80eda0386e5c99542d169da6960875 ccp4-6.0.2-core-src.tar.gz 62286123