QA: Removed unused versions.

(Portage version: 2.1.2_pre2-r1)
 (Signed Manifest commit)

3 files changed, 14 insertions, 446 deletions

diff --git a/sci-chemistry/ccp4/Manifest b/sci-chemistry/ccp4/Manifest
index e8832515b164..2356a0664f5f 100644
--- a/sci-chemistry/ccp4/Manifest
+++ b/sci-chemistry/ccp4/Manifest
@@ -1,3 +1,6 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX 6.0.1-dont-make-dirs-in-configure.patch 2790 RMD160 904e37ab1ea20dda50f50ce8780268eb5fa52480 SHA1 f8989cb867c92def86ccd88b4d67f38578d5d80b SHA256 2dbf78513ef94d88e446042e969644ad8a8462a22e80105e7481af93003a18bf
 MD5 3dc230e3cc15f5cd2a19968e8f07a9f2 files/6.0.1-dont-make-dirs-in-configure.patch 2790
 RMD160 904e37ab1ea20dda50f50ce8780268eb5fa52480 files/6.0.1-dont-make-dirs-in-configure.patch 2790
@@ -72,28 +75,28 @@ EBUILD ccp4-6.0.1-r1.ebuild 14018 RMD160 885fa6e0e3ebd0c998d53a3af77cfed008631ec
 MD5 33a6ca0f3d9dcaa800a00f8920b1717f ccp4-6.0.1-r1.ebuild 14018
 RMD160 885fa6e0e3ebd0c998d53a3af77cfed008631ece ccp4-6.0.1-r1.ebuild 14018
 SHA256 e0f9c5442844ba02ba3e1194f5d11fe6dd9a686b3a42b1d3e6a3f6e921cd0fb8 ccp4-6.0.1-r1.ebuild 14018
-EBUILD ccp4-6.0.1.ebuild 13729 RMD160 5fe2a8f1d42a810e8fda14c61e970f9146ab0b96 SHA1 25638dfbe892e82daccc6f40af9479ae88d2386f SHA256 d3d7ea08c1260eff42b49ead37d935bf3c9e38eac6e8eeb4fa86b3962ed25c7c
-MD5 48bda08719da61345f9297bdecd1b975 ccp4-6.0.1.ebuild 13729
-RMD160 5fe2a8f1d42a810e8fda14c61e970f9146ab0b96 ccp4-6.0.1.ebuild 13729
-SHA256 d3d7ea08c1260eff42b49ead37d935bf3c9e38eac6e8eeb4fa86b3962ed25c7c ccp4-6.0.1.ebuild 13729
 EBUILD ccp4-6.0.2.ebuild 13483 RMD160 20043e32b6a1aae3e9431c2c5f793816ee754b7e SHA1 bdfadd46b8b9e75e3758a17d98a077b69035e167 SHA256 0f4bc1201162b9dce21254e2f9497bbc391dd3ad7bba30fd5cec8fd9376e587b
 MD5 26accaf55746435d81fb5c55d1f41114 ccp4-6.0.2.ebuild 13483
 RMD160 20043e32b6a1aae3e9431c2c5f793816ee754b7e ccp4-6.0.2.ebuild 13483
 SHA256 0f4bc1201162b9dce21254e2f9497bbc391dd3ad7bba30fd5cec8fd9376e587b ccp4-6.0.2.ebuild 13483
-MISC ChangeLog 2216 RMD160 cbdef48f6f45064fa21a7a1e57b580e3899dc108 SHA1 d4fb0a46ab1a6ef736be031530329fcbae78d583 SHA256 3afb703e3805ab9c3830fa4d468fda79c16094311602fa859e2ee089580b3410
-MD5 2ebc390cdd05eabb3257b6a7b77d2309 ChangeLog 2216
-RMD160 cbdef48f6f45064fa21a7a1e57b580e3899dc108 ChangeLog 2216
-SHA256 3afb703e3805ab9c3830fa4d468fda79c16094311602fa859e2ee089580b3410 ChangeLog 2216
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+MD5 8cac6c4b6e10943b1dc6efe44a83210f ChangeLog 2320
+RMD160 537d3dd2b0a3a884d94515bcc03fae7d5d72a30a ChangeLog 2320
+SHA256 14f95030989e926616b097295b1b00ae99cf23549a31598556ff071b26bcc664 ChangeLog 2320
 MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
 MD5 43628e9f5743b5c3b018a82669a76bc7 metadata.xml 166
 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 metadata.xml 166
 SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852 metadata.xml 166
-MD5 af2485e5d663b3c625e3ee4f94748730 files/digest-ccp4-6.0.1 265
-RMD160 72caf22fe0480a8c577d84ff2ffb3bb3a6dcadd5 files/digest-ccp4-6.0.1 265
-SHA256 52ebe8c93194a9140171ac2e0d80b4750913b3e97ac1ee0f37c34ad9137deda8 files/digest-ccp4-6.0.1 265
 MD5 42c7b9d83453a9015d474ef4eaea76c1 files/digest-ccp4-6.0.1-r1 3286
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 SHA256 3ccb5d939d1f0386093758fe8c5cfbb54be329869df7a77b85c0653d613f0a86 files/digest-ccp4-6.0.1-r1 3286
 MD5 4197e0ed0288c715e184aa7df8a4dbd6 files/digest-ccp4-6.0.2 265
 RMD160 b7b82a63b44e956b19cd49241a49565cac594d25 files/digest-ccp4-6.0.2 265
 SHA256 a9d7f019b604fd193ac9797e76d5c3058771a16866134bdbe9b94ca137405946 files/digest-ccp4-6.0.2 265
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diff --git a/sci-chemistry/ccp4/ccp4-6.0.1.ebuild b/sci-chemistry/ccp4/ccp4-6.0.1.ebuild
deleted file mode 100644
index d3a1e56b5431..000000000000
--- a/sci-chemistry/ccp4/ccp4-6.0.1.ebuild
+++ /dev/null
@@ -1,432 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4/ccp4-6.0.1.ebuild,v 1.1 2006/06/16 20:46:02 spyderous Exp $
-
-inherit fortran eutils gnuconfig toolchain-funcs
-
-FORTRAN="g77 gfortran ifc"
-
-SRC="ftp://ftp.ccp4.ac.uk/ccp4"
-
-PATCH_TOT="0"
-#PATCH1=( src
-#	anisoanl.f-r1.22-r1.24.diff )
-#PATCH2=( src/sc_
-#	sc.f-r1.9-r1.9.2.1.diff )
-#PATCH3=( src/sc_
-#	setup.fh-r1.5-r1.5.2.1.diff )
-
-DESCRIPTION="Protein X-ray crystallography toolkit"
-HOMEPAGE="http://www.ccp4.ac.uk/"
-RESTRICT="mirror stricter"
-SRC_URI="${SRC}/${PV}/packed/${P}-core-src.tar.gz"
-#	${SRC}/${PV}/patches/${PATCH1[1]}
-#	${SRC}/${PV}/patches/${PATCH2[1]}
-#	${SRC}/${PV}/patches/${PATCH3[1]}"
-LICENSE="ccp4"
-SLOT="0"
-KEYWORDS="~ppc ~x86"
-IUSE="X"
-# app-office/sc overlaps sc binary and man page
-# We can't rename ours since the automated ccp4i interface expects it there,
-# as do many scripts. app-office/sc can't rename its because that's the name
-# of the package.
-RDEPEND="X? (
-			|| (
-				(
-					x11-libs/libX11
-					x11-libs/libXt
-					x11-libs/libXaw
-				)
-				virtual/x11
-			)
-		)
-		>=dev-lang/tcl-8.3
-		>=dev-lang/tk-8.3
-		>=dev-tcltk/blt-2.4
-		virtual/lapack
-		virtual/blas
-		=sci-libs/fftw-2*
-		sci-chemistry/pdb-extract
-		sci-chemistry/rasmol
-		sci-libs/mccp4
-		|| ( app-shells/tcsh app-shells/csh )
-		!app-office/sc"
-# >=sys-apps/portage-2.1.1_pre1 for RESTRICT=stricter
-# Otherwise portage dies instead of fixing RPATHs
-DEPEND="${RDEPEND}
-		X? (
-			|| (
-				(
-					x11-misc/imake
-					x11-proto/inputproto
-					x11-proto/xextproto
-				)
-				virtual/x11
-			)
-		)
-		>=sys-apps/portage-2.1.1_pre1"
-
-S="${WORKDIR}/${PN}-${PV}"
-
-src_unpack() {
-	unpack ${A}
-	cd ${S}
-
-	einfo "Applying upstream patches ..."
-	for patch in $(seq $PATCH_TOT); do
-		base="PATCH${patch}"
-		dir=$(eval echo \${${base}[0]})
-		p=$(eval echo \${${base}[1]})
-		pushd ${dir} >& /dev/null
-		ccp_patch ${DISTDIR}/${p}
-		popd >& /dev/null
-	done
-	einfo "Done."
-	echo
-
-	einfo "Applying Gentoo patches ..."
-	# These two only needed when attempting to install outside build dir via
-	# --bindir and --libdir instead of straight copying after build
-
-	# it attempts to install some libraries during the build
-	#ccp_patch ${FILESDIR}/${P}-install-libs-at-install-time.patch
-	# hklview/ipdisp.exe/xdlmapman/ipmosflm can't find libxdl_view
-	# without this patch when --libdir is set
-	# Rotgen still needs more patching to find it
-	#ccp_patch ${FILESDIR}/add-xdl-libdir.patch
-
-	# it tries to create libdir, bindir etc on live system in configure
-	ccp_patch ${FILESDIR}/${PV}-dont-make-dirs-in-configure.patch
-
-	# We already have sci-chemistry/rasmol
-	ccp_patch ${FILESDIR}/dont-build-rasmol.patch
-
-	# We already have sci-chemistry/pdb-extract
-# Use configure option instead
-#	ccp_patch ${FILESDIR}/dont-build-pdb-extract.patch
-
-	ccp_patch ${FILESDIR}/create-mosflm-bindir.patch
-	ccp_patch ${FILESDIR}/make-mosflm-libdir.patch
-	ccp_patch ${FILESDIR}/make-mosflm-index-libdir.patch
-	ccp_patch ${FILESDIR}/make-mosflm-cbf-libdir.patch
-	ccp_patch ${FILESDIR}/make-ipmosflm-dir.patch
-
-# Don't use these when we aren't building phaser
-#	ccp_patch ${FILESDIR}/make-phaser-bindir.patch
-#	ccp_patch ${FILESDIR}/no-phaser-ld-assume-kernel.patch
-#	# scons config.py tries to chmod python on live system
-#	ccp_patch ${FILESDIR}/dont-chmod-python-binary.patch
-
-	# Don't use this when we aren't building clipper
-	# For some reason clipper check for $enableval even when --enable is passed
-	ccp_patch ${FILESDIR}/pass-clipper-enablevals.patch
-	ccp_patch ${FILESDIR}/clipper-find-mccp4-includes.patch
-
-	# Default to firefox browser, not 'netscape'
-	ccp_patch ${FILESDIR}/ccp4i-default-to-firefox.patch
-
-	# Also use -lpthread when linking blas and lapack
-	# We may need more fixing to use libcblas for the C files
-	ccp_patch ${FILESDIR}/check-blas-lapack-pthread.patch
-
-	# gerror_ gets defined twice on ppc if you're using gfortran/g95
-	ccp_patch ${FILESDIR}/${PV}-ppc-double-define-gerror.patch
-
-	einfo "Done." # done applying Gentoo patches
-	echo
-
-	gnuconfig_update
-}
-
-src_compile() {
-	# GENTOO_OSNAME can be one of:
-	# irix irix64 sunos sunos64 aix hpux osf1 linux freebsd
-	# linux_compaq_compilers linux_intel_compilers generic Darwin
-	# ia64_linux_intel Darwin_ibm_compilers linux_ibm_compilers
-	if [[ "${FORTRANC}" = "ifc" ]]; then
-		if use ia64; then
-			GENTOO_OSNAME="ia64_linux_intel"
-		else
-			# Should be valid for x86, maybe amd64
-			GENTOO_OSNAME="linux_intel_compilers"
-		fi
-	else
-		# Should be valid for x86 and amd64, at least
-		GENTOO_OSNAME="linux"
-	fi
-
-	# Sets up env
-	ln -s \
-		ccp4.setup-bash \
-		${S}/include/ccp4.setup
-
-	# We agree to the license by emerging this, set in LICENSE
-	sed -i \
-		-e "s~^\(^agreed=\).*~\1yes~g" \
-		${S}/configure
-
-	# Fix up variables -- need to reset CCP4_MASTER at install-time
-	sed -i \
-		-e "s~^\(setenv CCP4_MASTER.*\)/.*~\1${WORKDIR}~g" \
-		-e "s~^\(setenv CCP4I_TCLTK.*\)/usr/local/bin~\1/usr/bin~g" \
-		${S}/include/ccp4.setup*
-
-	# Set up variables for build
-	source ${S}/include/ccp4.setup
-
-	export CC=$(tc-getCC)
-	export CXX=$(tc-getCXX)
-	export COPTIM=${CFLAGS}
-	export CXXOPTIM=${CXXFLAGS}
-	# Default to -O2 if FFLAGS is unset
-	export FC=${FORTRANC}
-	export FOPTIM=${FFLAGS:- -O2}
-
-	# Add xdl libraries to library search path
-	# Note: some of configure attaches CCP4_LIB to -L, and other parts
-	# append libfoo.a immediately after it, so it can only be a single path.
-	export CCP4_LIB="${CCP4}/x-windows/xdl_view/src/.libs"
-
-	# Can't use econf, configure rejects unknown options like --prefix
-	./configure \
-		$(use_enable X x) \
-		--with-shared-libs \
-		--with-fftw=/usr \
-		--with-warnings \
-		--disable-pdb_extract \
-		--disable-cctbx \
-		--disable-phaser \
-		--tmpdir="${TMPDIR}" \
-		${GENTOO_OSNAME} || die "econf failed"
-	emake -j1 || die "emake failed"
-}
-
-src_install() {
-# Only needed when using --bindir and --libdir
-	# Needed to avoid errors. Originally tried to make lib and bin
-	# in configure script, now patched out by dont-make-dirs-in-configure.patch
-#	dodir /usr/include /usr/$(get_libdir) /usr/bin
-
-#	make install || die "install failed"
-	einstall || die "install failed"
-
-	# Fix env
-	sed -i \
-		-e "s~^\(setenv CCP4_MASTER.*\)${WORKDIR}~\1/usr~g" \
-		-e "s~^\(setenv CCP4.*\$CCP4_MASTER\).*~\1~g" \
-		-e "s~^\(setenv CCP4I_TOP\).*~\1 \$CCP4/$(get_libdir)/ccp4/ccp4i~g" \
-		-e "s~^\(.*setenv CINCL.*\$CCP4\).*~\1/share/ccp4/include~g" \
-		-e "s~^\(.*setenv CLIBD .*\$CCP4\).*~\1/share/ccp4/data~g" \
-		-e "s~^\(.*setenv CLIBD_MON .*\)\$CCP4.*~\1\$CLIBD/monomers/~g" \
-		-e "s~^\(.*setenv MOLREPLIB .*\)\$CCP4.*~\1\$CLIBD/monomers/~g" \
-		-e "s~^\(.*setenv CCP4_BROWSER.*\).*~\1 firefox~g" \
-		${S}/include/ccp4.setup*
-
-	# Get rid of S instances
-	# Also the main clipper library is built as libclipper-core, not libclipper
-	sed -i \
-		-e "s:${S}:${ROOT}usr:g" \
-		-e "s:lclipper :lclipper-core :g" \
-		${S}/bin/clipper-config
-#	sed -i \
-#		-e "s:${S}:${ROOT}usr:g" \
-#		${S}/$(get_libdir)/cctbx/cctbx_build/setpaths*
-
-	# Bins
-	EXEDESTTREE="/usr/bin" doexe ${S}/bin/*
-
-	# Libs
-	for file in ${S}/lib/*; do
-		if [[ -d ${file} ]]; then
-			continue
-		elif [[ -x ${file} ]]; then
-			dolib.so ${file}
-		else
-			INSDESTTREE="/usr/$(get_libdir)" doins ${file}
-		fi
-	done
-
-	# Fix libdir in all *.la files
-	sed -i \
-		-e "s:^\(libdir=\).*:\1\'/usr/$(get_libdir)\':g" \
-		${D}/usr/$(get_libdir)/*.la
-
-	# Library symlinks
-	local LIBNAMES="libclipper-ccp4.so.0.0.0
-		libclipper-cif.so.0.0.0
-		libclipper-contrib.so.0.0.0
-		libclipper-core.so.0.0.0
-		libclipper-minimol.so.0.0.0
-		libclipper-mmdbold.so.0.0.0
-		libclipper-mmdb.so.0.0.0
-		libclipper-mtz.so.1.0.0
-		libclipper-phs.so.0.0.0
-		libjwc_c.so.0.1.1
-		libjwc_f.so.0.1.1
-		libssm.so.0.0.0
-		libxdl_viewextra.so.0.0.0
-		libxdl_view.so.2.0.0"
-
-	for LIBNAME in ${LIBNAMES}; do
-		library_dosym ${LIBNAME}
-	done
-
-#	dosym libclipper-ccp4.so.0.0.0 /usr/$(get_libdir)/libclipper-ccp4.so
-#	dosym libclipper-ccp4.so.0.0.0 /usr/$(get_libdir)/libclipper-ccp4.so.0
-#	dosym libclipper-ccp4.so.0.0.0 /usr/$(get_libdir)/libclipper-ccp4.so.0.0
-#
-#	dosym libclipper-cif.so.0.0.0 /usr/$(get_libdir)/libclipper-cif.so
-#	dosym libclipper-cif.so.0.0.0 /usr/$(get_libdir)/libclipper-cif.so.0
-#	dosym libclipper-cif.so.0.0.0 /usr/$(get_libdir)/libclipper-cif.so.0.0
-#
-#	dosym libclipper-contrib.so.0.0.0 /usr/$(get_libdir)/libclipper-contrib.so
-#	dosym libclipper-contrib.so.0.0.0 /usr/$(get_libdir)/libclipper-contrib.so.0
-#	dosym libclipper-contrib.so.0.0.0 /usr/$(get_libdir)/libclipper-contrib.so.0.0
-#
-#	dosym libclipper-core.so.0.0.0 /usr/$(get_libdir)/libclipper-core.so
-#	dosym libclipper-core.so.0.0.0 /usr/$(get_libdir)/libclipper-core.so.0
-#	dosym libclipper-core.so.0.0.0 /usr/$(get_libdir)/libclipper-core.so.0.0
-#
-#	dosym libclipper-minimol.so.0.0.0 /usr/$(get_libdir)/libclipper-minimol.so
-#	dosym libclipper-minimol.so.0.0.0 /usr/$(get_libdir)/libclipper-minimol.so.0
-#	dosym libclipper-minimol.so.0.0.0 /usr/$(get_libdir)/libclipper-minimol.so.0.0
-#
-#	dosym libclipper-mmdbold.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdbold.so
-#	dosym libclipper-mmdbold.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdbold.so.0
-#	dosym libclipper-mmdbold.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdbold.so.0.0
-#
-#	dosym libclipper-mmdb.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdb.so
-#	dosym libclipper-mmdb.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdb.so.0
-#	dosym libclipper-mmdb.so.0.0.0 /usr/$(get_libdir)/libclipper-mmdb.so.0.0
-#
-#	dosym libclipper-mtz.so.1.0.0 /usr/$(get_libdir)/libclipper-mtz.so
-#	dosym libclipper-mtz.so.1.0.0 /usr/$(get_libdir)/libclipper-mtz.so.1
-#	dosym libclipper-mtz.so.1.0.0 /usr/$(get_libdir)/libclipper-mtz.so.1.0
-#
-#	dosym libclipper-phs.so.0.0.0 /usr/$(get_libdir)/libclipper-phs.so
-#	dosym libclipper-phs.so.0.0.0 /usr/$(get_libdir)/libclipper-phs.so.0
-#	dosym libclipper-phs.so.0.0.0 /usr/$(get_libdir)/libclipper-phs.so.0.0
-#
-#	dosym libjwc_c.so.0.1.1 /usr/$(get_libdir)/libjwc_c.so
-#	dosym libjwc_c.so.0.1.1 /usr/$(get_libdir)/libjwc_c.so.0
-#	dosym libjwc_c.so.0.1.1 /usr/$(get_libdir)/libjwc_c.so.0.1
-#
-#	dosym libjwc_f.so.0.1.1 /usr/$(get_libdir)/libjwc_f.so
-#	dosym libjwc_f.so.0.1.1 /usr/$(get_libdir)/libjwc_f.so.0
-#	dosym libjwc_f.so.0.1.1 /usr/$(get_libdir)/libjwc_f.so.0.1
-#
-#	dosym libssm.so.0.0.0 /usr/$(get_libdir)/libssm.so
-#	dosym libssm.so.0.0.0 /usr/$(get_libdir)/libssm.so.0
-#	dosym libssm.so.0.0.0 /usr/$(get_libdir)/libssm.so.0.0
-#
-#	dosym libxdl_viewextra.so.0.0.0 /usr/$(get_libdir)/libxdl_viewextra.so
-#	dosym libxdl_viewextra.so.0.0.0 /usr/$(get_libdir)/libxdl_viewextra.so.0
-#	dosym libxdl_viewextra.so.0.0.0 /usr/$(get_libdir)/libxdl_viewextra.so.0.0
-#
-#	dosym libxdl_view.so.2.0.0 /usr/$(get_libdir)/libxdl_view.so
-#	dosym libxdl_view.so.2.0.0 /usr/$(get_libdir)/libxdl_view.so.2
-#	dosym libxdl_view.so.2.0.0 /usr/$(get_libdir)/libxdl_view.so.2.0
-
-	# Environment files, setup scripts, etc.
-	INSDESTTREE="/usr/share/ccp4/include" doins ${S}/include/*
-
-	# CCP4Interface - GUI
-	INSDESTTREE="/usr/$(get_libdir)/ccp4" doins -r ${S}/ccp4i
-	EXEDESTTREE="/usr/$(get_libdir)/ccp4/ccp4i/bin" doexe ${S}/ccp4i/bin/*
-
-	# Data
-	INSDESTTREE="/usr/share/ccp4" doins -r ${S}/lib/data
-
-	# Include files
-	for i in ccp4 clipper mmdb ssm; do
-		INSDESTTREE="/usr/include" doins -r ${S}/include/${i}
-	done
-
-	# Install docs and examples
-
-	doman ${S}/man/cat1/*
-
-	mv ${S}/manual/README ${S}/manual/README-manual
-	dodoc ${S}/manual/*
-
-	dodoc ${S}/README ${S}/CHANGES
-
-	dodoc ${S}/doc/*
-	rm ${D}/usr/share/doc/${PF}/GNUmakefile.gz
-	rm ${D}/usr/share/doc/${PF}/COPYING.gz
-
-	dohtml -r ${S}/html/*
-	dodoc ${S}/examples/README
-
-	# Fix wrongly installed HTML pages from clipper
-	dohtml "${D}"/usr/html/*
-	rm -rf "${D}"/usr/html
-
-	for i in data rnase toxd; do
-		DOCDESTTREE="examples/${i}" dodoc ${S}/examples/${i}/*
-	done
-
-	DOCDESTTREE="examples/tutorial" dohtml -r ${S}/examples/tutorial/html
-	DOCDESTTREE="examples/tutorial" dohtml examples/tutorial/tut.css
-	for i in data results; do
-		DOCDESTTREE="examples/tutorial/${i}" dodoc ${S}/examples/tutorial/${i}/*
-	done
-
-	for i in non-runnable runnable; do
-		DOCDESTTREE="examples/unix/${i}" dodoc ${S}/examples/unix/${i}
-	done
-
-	# Needed for ccp4i docs to work
-	dosym ../../share/doc/${PF}/examples /usr/$(get_libdir)/ccp4/examples
-	dosym ../../share/doc/${PF}/html /usr/$(get_libdir)/ccp4/html
-
-	# Fix overlaps with other packages
-	rm ${D}/usr/share/man/man1/rasmol.1.gz
-}
-
-pkg_postinst() {
-	einfo "The Web browser defaults to firefox. Change CCP4_BROWSER"
-	einfo "in /usr/share/ccp4/include/ccp4.setup* to modify this."
-
-	ewarn "Set your .bashrc or other shell login file to source"
-	ewarn "one of the ccp4.setup* files in ${ROOT}usr/share/ccp4/include."
-	ewarn "CCP4 will not work without this."
-}
-
-# Epatch wrapper for bulk patching
-ccp_patch() {
-	EPATCH_SINGLE_MSG="  ${1##*/} ..." epatch ${1}
-}
-
-# Links libname.so, libname.so.major and libname.so.major.minor
-# to libname.so.major.minor.micro
-library_dosym() {
-	local LIBNAME LIBDIR SUFFIX CORE_LIBNAME LIB_MAJOR LIB_MINOR LIB_VERSIONS
-
-	LIBNAME=${1}
-	LIBDIR=${2:-/usr/$(get_libdir)}
-
-	# Tag / on the end of libdir if needed
-	if [[ ${LIBDIR:$((${#LIBDIR}-1)):1} != "/" ]]; then
-		LIBDIR="${LIBDIR}/"
-	fi
-
-	if [[ "${LIBNAME}" != *.so.* ]]; then
-		msg="library_dosym() requires a shared, versioned library as an argument"
-		eerror "$msg"
-		die "$msg"
-	fi
-
-	SUFFIX=${LIBNAME##*so.}
-	CORE_LIBNAME=${LIBNAME%.so.*}
-	CORE_LIBNAME="${CORE_LIBNAME}.so"
-	LIB_MAJOR=${SUFFIX%%.*}
-	LIB_MINOR=${SUFFIX#*.}
-	LIB_MINOR=${SUFFIX%%.*}
-	LIB_VERSIONS="${LIB_MAJOR} ${LIB_MAJOR}.${LIB_MINOR}"
-	for LIB_SUFFIX in .${LIB_MAJOR} .${LIB_MAJOR}.${LIB_MINOR} ""; do
-		einfo "Calling dosym ${LIBNAME} ${LIBDIR} ${CORE_LIBNAME} ${LIB_SUFFIX}"
-		dosym ${LIBNAME} ${LIBDIR}${CORE_LIBNAME}${LIB_SUFFIX}
-	done
-}
diff --git a/sci-chemistry/ccp4/files/digest-ccp4-6.0.1 b/sci-chemistry/ccp4/files/digest-ccp4-6.0.1
deleted file mode 100644
index acc5dc94a96a..000000000000
--- a/sci-chemistry/ccp4/files/digest-ccp4-6.0.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 bd3ff43388b58841de79bcc23ebf81e3 ccp4-6.0.1-core-src.tar.gz 59311291
-RMD160 0f514fe30f22a4f6eb2e05c8bab567d2132e8fae ccp4-6.0.1-core-src.tar.gz 59311291
-SHA256 26a5704d707c3bc2fbe4c1d0804abccc1c50255005d26a8ec3a03fcba63335f2 ccp4-6.0.1-core-src.tar.gz 59311291