New package providing rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in static and dynamic protein structures. Also has a neat PyMol plugin.

(Portage version: 2.1_pre1)

5 files changed, 77 insertions, 0 deletions

diff --git a/sci-chemistry/caver/ChangeLog b/sci-chemistry/caver/ChangeLog
new file mode 100644
index 000000000000..1cd00b2ff2dd
--- /dev/null
+++ b/sci-chemistry/caver/ChangeLog
@@ -0,0 +1,12 @@
+# ChangeLog for sci-chemistry/caver
+# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/caver/ChangeLog,v 1.1 2005/12/20 03:56:38 spyderous Exp $
+
+*caver-0.99.1 (20 Dec 2005)
+
+  20 Dec 2005; Donnie Berkholz <spyderous@gentoo.org>; +metadata.xml,
+  +caver-0.99.1.ebuild:
+  New package providing rapid, accurate and fully automated calculation of
+  pathways leading from buried cavities to outside solvent in static and
+  dynamic protein structures. Also has a neat PyMol plugin.
+
diff --git a/sci-chemistry/caver/Manifest b/sci-chemistry/caver/Manifest
new file mode 100644
index 000000000000..d8be652412f3
--- /dev/null
+++ b/sci-chemistry/caver/Manifest
@@ -0,0 +1,5 @@
+MD5 58ffb31b7690028155f84448271d795d caver-0.99.1.ebuild 1267
+MD5 58ffb31b7690028155f84448271d795d caver-0.99.ebuild 1267
+MD5 89c783305f47987871daf4534677fc9d files/digest-caver-0.99 128
+MD5 946c4f9350e2386e497befe7afbe9cc2 files/digest-caver-0.99.1 130
+MD5 82372e25898d568e7439b62f685b94fb files/makefile-fixes.patch 837
diff --git a/sci-chemistry/caver/caver-0.99.1.ebuild b/sci-chemistry/caver/caver-0.99.1.ebuild
new file mode 100644
index 000000000000..737c2859a97a
--- /dev/null
+++ b/sci-chemistry/caver/caver-0.99.1.ebuild
@@ -0,0 +1,49 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/caver/caver-0.99.1.ebuild,v 1.1 2005/12/20 03:56:38 spyderous Exp $
+
+inherit multilib python
+
+MY_PN="${PN}_unix"
+MY_P="${MY_PN}_v${PV}"
+DESCRIPTION="Rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in static and dynamic protein structures"
+HOMEPAGE="http://viper.chemi.muni.cz/caver/"
+SRC_URI="${MY_P}.tar.gz
+	pymol? ( pymolplug.tar.gz )"
+LICENSE="CAVER"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE="pymol"
+RDEPEND="media-libs/qhull
+	pymol? ( sci-chemistry/pymol )"
+DEPEND="${RDEPEND}"
+RESTRICT="fetch"
+S="${WORKDIR}/${MY_P}"
+
+pkg_nofetch() {
+	einfo "Download ${MY_P}.tar.gz"
+	if use pymol; then
+		einfo "and pymolplug.tar.gz"
+	fi
+	einfo "from ${HOMEPAGE}. This requires registration."
+	einfo "Place them in ${DISTDIR}."
+}
+
+src_install() {
+	make DESTDIR="${D}" install
+	if use pymol; then
+		python_version
+		sed -i \
+			-e "s:^\(CAVER_BINARY_LOCATION\).*:\1 = \"${ROOT}usr/bin/caver\":g" \
+			${WORKDIR}/pymolplug/caver.py
+		insinto /usr/$(get_libdir)/python${PYVER}/site-packages/pmg_tk/startup
+		doins ${WORKDIR}/pymolplug/caver.py
+	fi
+}
+
+pkg_postinst() {
+	if use pymol; then
+		python_mod_compile \
+		/usr/$(get_libdir)/python${PYVER}/site-packages/pmg_tk/startup/caver.py
+	fi
+}
diff --git a/sci-chemistry/caver/files/digest-caver-0.99.1 b/sci-chemistry/caver/files/digest-caver-0.99.1
new file mode 100644
index 000000000000..80f3e372b61f
--- /dev/null
+++ b/sci-chemistry/caver/files/digest-caver-0.99.1
@@ -0,0 +1,2 @@
+MD5 7dfc10f67d345d81fa74f0c2c8bbca8d caver_unix_v0.99.1.tar.gz 898765
+MD5 522581ce929adb5d3bef0fa540382362 pymolplug.tar.gz 81137
diff --git a/sci-chemistry/caver/metadata.xml b/sci-chemistry/caver/metadata.xml
new file mode 100644
index 000000000000..211b8bd0f0a4
--- /dev/null
+++ b/sci-chemistry/caver/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+<email>spyderous@gentoo.org</email>
+<name>Donnie Berkholz</name>
+</maintainer>
+</pkgmetadata>