Version bump and fix bug 367921

(Portage version: 2.2_rc86/cvs/Linux x86_64)

2 files changed, 58 insertions, 1 deletions

diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog
index ad805752a794..ecc698adea06 100644
--- a/sci-biology/mira/ChangeLog
+++ b/sci-biology/mira/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/mira
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.13 2011/02/11 13:03:49 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.14 2011/05/21 19:34:23 weaver Exp $
+
+*mira-3.2.1 (21 May 2011)
+
+  21 May 2011; Andrey Kislyuk <weaver@gentoo.org> +mira-3.2.1.ebuild:
+  Version bump and fix bug 367921
 
   11 Feb 2011; Markos Chandras <hwoarang@gentoo.org> mira-3.2.0.ebuild:
   Stable on amd64 wrt bug #353568
diff --git a/sci-biology/mira/mira-3.2.1.ebuild b/sci-biology/mira/mira-3.2.1.ebuild
new file mode 100644
index 000000000000..e02935474788
--- /dev/null
+++ b/sci-biology/mira/mira-3.2.1.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.2.1.ebuild,v 1.1 2011/05/21 19:34:23 weaver Exp $
+
+EAPI="3"
+
+MIRA_3RDPARTY_PV="17-04-2010"
+
+inherit autotools base multilib
+
+DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
+HOMEPAGE="http://www.chevreux.org/projects_mira.html"
+SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2
+	mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos"
+
+CDEPEND=">=dev-libs/boost-1.41.0-r3
+	dev-util/google-perftools"
+DEPEND="${CDEPEND}
+	dev-libs/expat"
+RDEPEND="${CDEPEND}"
+
+src_prepare() {
+	find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die
+	epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch
+	AT_M4DIR="config/m4" eautoreconf
+}
+
+src_configure() {
+	econf \
+		--with-boost="${EPREFIX}"/usr/$(get_libdir) \
+		--with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \
+		--with-boost-thread=boost_thread-mt
+}
+
+src_compile() {
+	base_src_compile
+	# TODO: resolve docbook incompatibility for building docs
+	#if use doc; then emake -C doc clean docs || die; fi
+}
+
+src_install() {
+	einstall || die
+	dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL
+	find doc/docs/man -type f | xargs doman
+	find doc/docs/texinfo -type f | xargs doinfo
+	dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl}
+}