diff options
author | Olivier Fisette <ribosome@gentoo.org> | 2005-01-30 18:21:09 +0000 |
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committer | Olivier Fisette <ribosome@gentoo.org> | 2005-01-30 18:21:09 +0000 |
commit | b0399198a77ad4e894352a77ecd98c17d87709eb (patch) | |
tree | 80e7e9e1c08bffc578035bde8bf94a7f5806e883 /sci-biology | |
parent | (Portage version: 2.0.51-r15) (Manifest recommit) (diff) | |
download | gentoo-2-b0399198a77ad4e894352a77ecd98c17d87709eb.tar.gz gentoo-2-b0399198a77ad4e894352a77ecd98c17d87709eb.tar.bz2 gentoo-2-b0399198a77ad4e894352a77ecd98c17d87709eb.zip |
Ebuild cleanups
(Portage version: 2.0.51-r15)
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/seaview/ChangeLog | 6 | ||||
-rw-r--r-- | sci-biology/seaview/seaview-20041220.ebuild | 6 | ||||
-rw-r--r-- | sci-biology/staden/ChangeLog | 5 | ||||
-rw-r--r-- | sci-biology/staden/staden-1.5.3.ebuild | 15 | ||||
-rw-r--r-- | sci-biology/tree-puzzle/ChangeLog | 5 | ||||
-rw-r--r-- | sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild | 7 | ||||
-rw-r--r-- | sci-biology/treeviewx/ChangeLog | 7 | ||||
-rw-r--r-- | sci-biology/treeviewx/treeviewx-0.4.ebuild | 12 | ||||
-rw-r--r-- | sci-biology/vienna-rna/ChangeLog | 5 | ||||
-rw-r--r-- | sci-biology/vienna-rna/vienna-rna-1.4.ebuild | 12 |
10 files changed, 49 insertions, 31 deletions
diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog index e108db353718..441d6327e446 100644 --- a/sci-biology/seaview/ChangeLog +++ b/sci-biology/seaview/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/seaview # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.3 2005/01/09 18:39:11 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.4 2005/01/30 18:21:08 ribosome Exp $ + + 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> + seaview-20041220.ebuild: + Ebuild cleanup. *seaview-20041220 (09 Jan 2005) diff --git a/sci-biology/seaview/seaview-20041220.ebuild b/sci-biology/seaview/seaview-20041220.ebuild index 00dfb5320c4b..b786d9e46349 100644 --- a/sci-biology/seaview/seaview-20041220.ebuild +++ b/sci-biology/seaview/seaview-20041220.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20041220.ebuild,v 1.1 2005/01/09 18:39:11 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20041220.ebuild,v 1.2 2005/01/30 18:21:09 ribosome Exp $ DESCRIPTION="A graphical multiple sequence alignment editor" HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" @@ -17,8 +17,8 @@ DEPEND="x11-libs/fltk src_compile() { # Corrects location of libfltk. CFLAGS="${CFLAGS} -c -I/usr/include/fltk-1.1" - sed -i -e "s%\"seaview.help\", %\"/usr/share/${PN}/seaview.help\", %" seaview.cxx - sed -i -e 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile + sed -i -e "s%\"seaview.help\", %\"/usr/share/${PN}/seaview.help\", %" seaview.cxx || die + sed -i -e 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile || die emake -e || die } diff --git a/sci-biology/staden/ChangeLog b/sci-biology/staden/ChangeLog index 233cc1793ebe..d314f704a87a 100644 --- a/sci-biology/staden/ChangeLog +++ b/sci-biology/staden/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/staden # Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden/ChangeLog,v 1.9 2005/01/25 04:19:24 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden/ChangeLog,v 1.10 2005/01/30 18:21:09 ribosome Exp $ + + 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> staden-1.5.3.ebuild: + Ebuild cleanup. 24 Jan 2005; Olivier Fisette <ribosome@gentoo.org> +files/staden-1.5.3-mutlib-gcc-3.4.patch, staden-1.5.3.ebuild: diff --git a/sci-biology/staden/staden-1.5.3.ebuild b/sci-biology/staden/staden-1.5.3.ebuild index 0d0a5891b7fc..7f14ec42e436 100644 --- a/sci-biology/staden/staden-1.5.3.ebuild +++ b/sci-biology/staden/staden-1.5.3.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden/staden-1.5.3.ebuild,v 1.3 2005/01/25 04:19:24 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden/staden-1.5.3.ebuild,v 1.4 2005/01/30 18:21:09 ribosome Exp $ inherit eutils toolchain-funcs @@ -76,7 +76,7 @@ src_unpack() { epatch ${FILESDIR}/${P}-mutlib-gcc-3.4.patch cd ${S}/src/mk # Remove the "-fpic" flag. This will be replaced by "-fPIC". - sed -i -e 's/SHLIB_CFLAGS = -fpic/SHLIB_CFLAGS = /' linux.mk + sed -i -e 's/SHLIB_CFLAGS = -fpic/SHLIB_CFLAGS = /' linux.mk || die cd ${S} # "getopt" is incorrectly included as an extern (for Win32 compatibility). @@ -99,15 +99,15 @@ src_unpack() { # Documentation build process cannot find "update-nodes.el". cd ${S}/doc/manual/tools - sed -i -e 's%emacs -batch $1 -l ${DOCDIR:-.}/tools/update-nodes.el%emacs -batch $1 -l ${DOCDIR:-..}/manual/tools/update-nodes.el%' update-nodes + sed -i -e 's%emacs -batch $1 -l ${DOCDIR:-.}/tools/update-nodes.el%emacs -batch $1 -l ${DOCDIR:-..}/manual/tools/update-nodes.el%' update-nodes || die # Perl scripts search for "pearl" in "/usr/local". for SCRIPT in *.pl texi2html; do - sed -i -e 's%/usr/local/bin/perl%/usr/bin/perl%' ${SCRIPT} + sed -i -e 's%/usr/local/bin/perl%/usr/bin/perl%' ${SCRIPT} || die done # The "convert" tool from Imagemagick is searched for in "/usr/X11R6". - sed -i -e 's%/usr/X11R6/bin/convert%/usr/bin/convert%' make_ps + sed -i -e 's%/usr/X11R6/bin/convert%/usr/bin/convert%' make_ps | die # Solves issues with images in the exercise* texi files. cd ${S}/course/texi @@ -120,8 +120,9 @@ src_unpack() { # system global Makefile. We also want only "-fPIC" shared libraries. einfo "Applying user-defined compilation/linking flags:" cd ${S}/src/mk - sed -i -e "s/COPT = -O2 -g3 -DNDEBUG/COPT = ${CFLAGS:-"-O2 -g3 -DNDEBUG"} -fPIC/" global.mk - sed -i -e "s/FOPT = -O2 -g3 -DNDEBUG/FOPT = ${FFLAGS:-"-O2 -g3 -DNDEBUG"} -fPIC/" global.mk + sed -e "s/COPT = -O2 -g3 -DNDEBUG/COPT = ${CFLAGS:-"-O2 -g3 -DNDEBUG"} -fPIC/" \ + -e "s/FOPT = -O2 -g3 -DNDEBUG/FOPT = ${FFLAGS:-"-O2 -g3 -DNDEBUG"} -fPIC/" \ + -i global.mk || die } src_compile() { diff --git a/sci-biology/tree-puzzle/ChangeLog b/sci-biology/tree-puzzle/ChangeLog index 6c04fe8b9907..f55cb102ddbe 100644 --- a/sci-biology/tree-puzzle/ChangeLog +++ b/sci-biology/tree-puzzle/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/tree-puzzle # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/ChangeLog,v 1.5 2005/01/18 17:13:08 luckyduck Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/ChangeLog,v 1.6 2005/01/30 18:21:09 ribosome Exp $ + + 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> tree-puzzle-5.2.ebuild: + Ebuild cleanup. 18 Jan 2005; Jan Brinkmann <luckyduck@gentoo.org> tree-puzzle-5.2.ebuild: added ~amd64 to KEYWORDS. fixes bug #78237 diff --git a/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild b/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild index 2e8169627e2a..60f2c53dbf3e 100644 --- a/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild +++ b/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild,v 1.3 2005/01/18 17:13:08 luckyduck Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild,v 1.4 2005/01/30 18:21:09 ribosome Exp $ inherit toolchain-funcs @@ -26,8 +26,9 @@ src_compile() { econf || die cd ${S}/src if ! use mpi; then - sed -i -e 's:bin_PROGRAMS = puzzle$(EXEEXT) ppuzzle:bin_PROGRAMS = puzzle :' Makefile - sed -i -e 's:DIST_SOURCES = $(ppuzzle_SOURCES) $(puzzle_SOURCES):DIST_SOURCES = $(puzzle_SOURCES):' Makefile + sed -e 's:bin_PROGRAMS = puzzle$(EXEEXT) ppuzzle:bin_PROGRAMS = puzzle :' \ + -e 's:DIST_SOURCES = $(ppuzzle_SOURCES) $(puzzle_SOURCES):DIST_SOURCES = $(puzzle_SOURCES):' \ + -i Makefile || die fi cd ${S} emake || die diff --git a/sci-biology/treeviewx/ChangeLog b/sci-biology/treeviewx/ChangeLog index c8c33e4f7e54..6c7fffe15720 100644 --- a/sci-biology/treeviewx/ChangeLog +++ b/sci-biology/treeviewx/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/treeviewx -# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/treeviewx/ChangeLog,v 1.2 2004/12/23 20:20:43 swegener Exp $ +# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/treeviewx/ChangeLog,v 1.3 2005/01/30 18:21:09 ribosome Exp $ + + 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> treeviewx-0.4.ebuild: + Ebuild cleanup. *treeviewx-0.4 (23 Dec 2004) diff --git a/sci-biology/treeviewx/treeviewx-0.4.ebuild b/sci-biology/treeviewx/treeviewx-0.4.ebuild index 4731c52a315d..fa113cc6130d 100644 --- a/sci-biology/treeviewx/treeviewx-0.4.ebuild +++ b/sci-biology/treeviewx/treeviewx-0.4.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2004 Gentoo Foundation +# Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/treeviewx/treeviewx-0.4.ebuild,v 1.1 2004/12/23 18:11:05 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/treeviewx/treeviewx-0.4.ebuild,v 1.2 2005/01/30 18:21:09 ribosome Exp $ DESCRIPTION="A phylogenetic tree viewer" HOMEPAGE="http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/" @@ -29,13 +29,13 @@ src_compile() { econf || die # The configure script may pick the Unicode wxGTK. if grep -q "gtk2u" Makefile; then - sed -i -e 's/gtk2u/gtk2/' Makefile + sed -i -e 's/gtk2u/gtk2/' Makefile || die cd TreeLib - sed -i -e 's/gtk2u/gtk2/' Makefile + sed -i -e 's/gtk2u/gtk2/' Makefile || die cd ../ncl-2.0 - sed -i -e 's/gtk2u/gtk2/' Makefile + sed -i -e 's/gtk2u/gtk2/' Makefile || die cd src - sed -i -e 's/gtk2u/gtk2/' Makefile + sed -i -e 's/gtk2u/gtk2/' Makefile || die fi cd ${S} emake || die diff --git a/sci-biology/vienna-rna/ChangeLog b/sci-biology/vienna-rna/ChangeLog index 881a324cf7ac..82cd35e907d0 100644 --- a/sci-biology/vienna-rna/ChangeLog +++ b/sci-biology/vienna-rna/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/vienna-rna # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.4 2005/01/09 18:48:37 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.5 2005/01/30 18:21:09 ribosome Exp $ + + 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> vienna-rna-1.4.ebuild: + Ebuild cleanup. *vienna-rna-1.5_beta (09 Jan 2005) diff --git a/sci-biology/vienna-rna/vienna-rna-1.4.ebuild b/sci-biology/vienna-rna/vienna-rna-1.4.ebuild index fd01ab896cd9..fd15d62688d2 100644 --- a/sci-biology/vienna-rna/vienna-rna-1.4.ebuild +++ b/sci-biology/vienna-rna/vienna-rna-1.4.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.4.ebuild,v 1.2 2005/01/09 18:48:37 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.4.ebuild,v 1.3 2005/01/30 18:21:09 ribosome Exp $ inherit flag-o-matic @@ -19,11 +19,11 @@ DEPEND="perl? ( dev-lang/perl ) S="${WORKDIR}/ViennaRNA-${PV}" src_compile() { - sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Perl/RNAfold.pl - sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/ct2b.pl - sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/b2mt.pl - sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/dpzoom.pl - sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/mountain.pl + sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Perl/RNAfold.pl || die + sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/ct2b.pl || die + sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/b2mt.pl || die + sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/dpzoom.pl || die + sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/mountain.pl || die append-flags -I../H make -e library programs gammel subopt || die use perl && make -e perl || die |