Removed old version

(Portage version: 2.0.51.22-r2)

12 files changed, 19 insertions, 105 deletions

diff --git a/sci-biology/embassy-mse/ChangeLog b/sci-biology/embassy-mse/ChangeLog
index 4aa5a85cab89..e379ae1a6041 100644
--- a/sci-biology/embassy-mse/ChangeLog
+++ b/sci-biology/embassy-mse/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/embassy-mse
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.8 2005/06/26 21:07:12 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.9 2005/07/28 02:20:03 ribosome Exp $
+
+  28 Jul 2005; Olivier Fisette <ribosome@gentoo.org>
+  -embassy-mse-1.0.0.ebuild:
+  Removed old version.
 
   26 Jun 2005; Lina Pezzella <j4rg0n@gentoo.org>
   embassy-mse-1.0.0-r1.ebuild:
diff --git a/sci-biology/embassy-mse/embassy-mse-1.0.0.ebuild b/sci-biology/embassy-mse/embassy-mse-1.0.0.ebuild
deleted file mode 100644
index 14a06e6cdf15..000000000000
--- a/sci-biology/embassy-mse/embassy-mse-1.0.0.ebuild
+++ /dev/null
@@ -1,15 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/embassy-mse-1.0.0.ebuild,v 1.4 2005/03/22 22:16:07 ribosome Exp $
-
-inherit embassy-2.9
-
-DESCRIPTION="EMBOSS integrated version of MSE - Multiple Sequence Editor"
-
-KEYWORDS="x86 ~ppc ppc-macos"
-
-src_install() {
-	embassy_src_install
-	insinto /usr/include/emboss/mse
-	doins h/*.h
-}
diff --git a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0 b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0
deleted file mode 100644
index 76bdeea7288d..000000000000
--- a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0
+++ /dev/null
@@ -1,2 +0,0 @@
-MD5 c6facfd1750e88a0c8b7bb7ac826d472 EMBOSS-2.9.0.tar.gz 14479274
-MD5 c599e848a44d6353e42fb59578417e41 MSE-1.0.0.tar.gz 405440
diff --git a/sci-biology/embassy-phylip/ChangeLog b/sci-biology/embassy-phylip/ChangeLog
index 4323ffad6629..565e72807add 100644
--- a/sci-biology/embassy-phylip/ChangeLog
+++ b/sci-biology/embassy-phylip/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/embassy-phylip
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/ChangeLog,v 1.8 2005/06/26 21:08:09 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/ChangeLog,v 1.9 2005/07/28 02:21:23 ribosome Exp $
+
+  28 Jul 2005; Olivier Fisette <ribosome@gentoo.org>
+  -embassy-phylip-3.57c.ebuild:
+  Removed old version.
 
   26 Jun 2005; Lina Pezzella <j4rg0n@gentoo.org>
   embassy-phylip-3.57c-r1.ebuild:
diff --git a/sci-biology/embassy-phylip/embassy-phylip-3.57c.ebuild b/sci-biology/embassy-phylip/embassy-phylip-3.57c.ebuild
deleted file mode 100644
index 2a5cce827349..000000000000
--- a/sci-biology/embassy-phylip/embassy-phylip-3.57c.ebuild
+++ /dev/null
@@ -1,10 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/embassy-phylip-3.57c.ebuild,v 1.4 2005/03/22 22:16:07 ribosome Exp $
-
-inherit embassy-2.9
-
-DESCRIPTION="EMBOSS integrated version of the PHYLogeny Inference Package"
-LICENSE="freedist"
-
-KEYWORDS="x86 ~ppc ppc-macos"
diff --git a/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.57c b/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.57c
deleted file mode 100644
index cb8e4eb0697f..000000000000
--- a/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.57c
+++ /dev/null
@@ -1,2 +0,0 @@
-MD5 c6facfd1750e88a0c8b7bb7ac826d472 EMBOSS-2.9.0.tar.gz 14479274
-MD5 6a5afaed10f177758b84f2c3c51aee78 PHYLIP-3.57c.tar.gz 843060
diff --git a/sci-biology/embassy-topo/ChangeLog b/sci-biology/embassy-topo/ChangeLog
index 4bbaa5bf6252..8f57777d9862 100644
--- a/sci-biology/embassy-topo/ChangeLog
+++ b/sci-biology/embassy-topo/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/embassy-topo
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-topo/ChangeLog,v 1.8 2005/06/26 21:09:01 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-topo/ChangeLog,v 1.9 2005/07/28 02:22:30 ribosome Exp $
+
+  28 Jul 2005; Olivier Fisette <ribosome@gentoo.org>
+  -embassy-topo-1.0.0.ebuild:
+  Removed old version.
 
   26 Jun 2005; Lina Pezzella <j4rg0n@gentoo.org>
   embassy-topo-1.0.0-r1.ebuild:
diff --git a/sci-biology/embassy-topo/embassy-topo-1.0.0.ebuild b/sci-biology/embassy-topo/embassy-topo-1.0.0.ebuild
deleted file mode 100644
index eea97d245a15..000000000000
--- a/sci-biology/embassy-topo/embassy-topo-1.0.0.ebuild
+++ /dev/null
@@ -1,9 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-topo/embassy-topo-1.0.0.ebuild,v 1.4 2005/03/22 22:16:07 ribosome Exp $
-
-inherit embassy-2.9
-
-DESCRIPTION="EMBOSS integrated version of TOPO - Transmembrane protein display"
-
-KEYWORDS="x86 ~ppc ppc-macos"
diff --git a/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0 b/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0
deleted file mode 100644
index 6cb63673fa8e..000000000000
--- a/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0
+++ /dev/null
@@ -1,2 +0,0 @@
-MD5 c6facfd1750e88a0c8b7bb7ac826d472 EMBOSS-2.9.0.tar.gz 14479274
-MD5 51885b65b79b87631f3536362e453ed8 TOPO-1.0.0.tar.gz 342704
diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog
index 80bb5674f787..109233fc75c0 100644
--- a/sci-biology/emboss/ChangeLog
+++ b/sci-biology/emboss/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/emboss
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.13 2005/06/25 02:36:49 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.14 2005/07/28 02:24:17 ribosome Exp $
+
+  28 Jul 2005; Olivier Fisette <ribosome@gentoo.org> -emboss-2.9.0.ebuild:
+  Removed old version.
 
   25 Jun 2005; Lina Pezzella <j4rg0n@gentoo.org> emboss-2.10.0.ebuild:
   Stable ppc-macos
diff --git a/sci-biology/emboss/emboss-2.9.0.ebuild b/sci-biology/emboss/emboss-2.9.0.ebuild
deleted file mode 100644
index dbf4060e4077..000000000000
--- a/sci-biology/emboss/emboss-2.9.0.ebuild
+++ /dev/null
@@ -1,60 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-2.9.0.ebuild,v 1.7 2005/05/02 09:27:30 hansmi Exp $
-
-DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
-HOMEPAGE="http://emboss.sourceforge.net/"
-SRC_URI="ftp://ftp.uk.embnet.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
-LICENSE="GPL-2 LGPL-2"
-
-SLOT="0"
-KEYWORDS="x86 ppc ppc-macos"
-IUSE="X png minimal"
-
-DEPEND="X? ( virtual/x11 )
-	png? (
-		sys-libs/zlib
-		media-libs/libpng
-		>=media-libs/gd-1.8
-	)
-	!minimal? (
-		sci-biology/primer3
-		sci-biology/clustalw
-	)"
-
-PDEPEND="!minimal? (
-		sci-biology/aaindex
-		sci-biology/cutg
-		sci-biology/prints
-		sci-biology/prosite
-		sci-biology/rebase
-		sci-biology/transfac
-	)"
-
-S=${WORKDIR}/EMBOSS-${PV}
-
-src_compile() {
-	EXTRA_CONF="--includedir=${D}/usr/include/emboss"
-	! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
-	! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"
-
-	econf ${EXTRA_CONF} || die
-	# Do not install the JEMBOSS component (the --without-java configure option
-	# does not work). JEMBOSS will be available as a separate package.
-	sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile || die
-	emake || die
-}
-
-src_install() {
-	einstall || die
-	dodoc AUTHORS ChangeLog FAQ NEWS README THANKS
-
-	# Install env file for setting libplplot and acd files path.
-	insinto /etc/env.d
-	newins ${FILESDIR}/22emboss-r1 22emboss
-
-	# Symlink preinstalled docs to /usr/share/doc.
-	dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals
-	dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs
-	dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials
-}
diff --git a/sci-biology/emboss/files/digest-emboss-2.9.0 b/sci-biology/emboss/files/digest-emboss-2.9.0
deleted file mode 100644
index ab9c2bc595ca..000000000000
--- a/sci-biology/emboss/files/digest-emboss-2.9.0
+++ /dev/null
@@ -1 +0,0 @@
-MD5 c6facfd1750e88a0c8b7bb7ac826d472 EMBOSS-2.9.0.tar.gz 14479274