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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-03-09 19:57:28 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-03-09 19:57:28 +0000 |
| commit | 6b8c5a26344874bc2877211e172a7f3241e07290 (patch) | |
| tree | 59a23ee3f953a656cc41e6a3cad84a2d6a064a69 /sci-biology | |
| parent | Sync kde4 eclasses with kde-testing (review by scarabeus and jmbsvicetto). (diff) | |
| download | gentoo-2-6b8c5a26344874bc2877211e172a7f3241e07290.tar.gz gentoo-2-6b8c5a26344874bc2877211e172a7f3241e07290.tar.bz2 gentoo-2-6b8c5a26344874bc2877211e172a7f3241e07290.zip | |
QA fixes
(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/mummer/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/mummer/mummer-3.21.ebuild | 25 |
2 files changed, 15 insertions, 15 deletions
diff --git a/sci-biology/mummer/ChangeLog b/sci-biology/mummer/ChangeLog index 2cd72219071e..67fd68b9c783 100644 --- a/sci-biology/mummer/ChangeLog +++ b/sci-biology/mummer/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/mummer # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.5 2009/03/09 15:55:37 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.6 2009/03/09 19:57:28 weaver Exp $ + + 09 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> mummer-3.21.ebuild: + QA fixes 09 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> mummer-3.20.ebuild, mummer-3.21.ebuild: diff --git a/sci-biology/mummer/mummer-3.21.ebuild b/sci-biology/mummer/mummer-3.21.ebuild index 51f1cf3895b4..9038b7ca1c9f 100644 --- a/sci-biology/mummer/mummer-3.21.ebuild +++ b/sci-biology/mummer/mummer-3.21.ebuild @@ -1,13 +1,12 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v 1.3 2009/03/09 15:55:37 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v 1.4 2009/03/09 19:57:28 weaver Exp $ inherit eutils -MY_P="MUMmer${PV}" DESCRIPTION="A rapid whole genome aligner" HOMEPAGE="http://mummer.sourceforge.net/" -SRC_URI="mirror://sourceforge/mummer/${MY_P}.tar.gz" +SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" LICENSE="Artistic" SLOT="0" @@ -17,17 +16,17 @@ KEYWORDS="~amd64 ~x86" DEPEND="" RDEPEND="app-shells/tcsh" -S="${WORKDIR}/${MY_P}" +S="${WORKDIR}/MUMmer${PV}" src_unpack() { unpack ${A} - # Warning: package uses CPPFLAGS on c in addition to cpp, despite the name + # Warning: package uses CPPFLAGS on c as well as cpp, despite the name sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \ - -e 's/LDFLAGS =$//' "${S}/Makefile" + -e 's/LDFLAGS =$//' "${S}/Makefile" || die } src_compile() { - emake || die "emake failed" + emake || die sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ @@ -35,18 +34,16 @@ src_compile() { -e 's|\(set bindir = \).*|\1/usr/bin|' \ -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ - scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die "Failed to replace paths" - sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh + scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die + mv annotate mummer-annotate || die + sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die } src_install() { - dobin nucmer2xfig show-coords mapview show-snps run-mummer{1,3} \ - exact-tandems promer repeat-match show-aligns gaps mummer \ - show-tiling mgaps nucmer mummerplot delta-filter combineMUMs aux_bin/* || die - newbin annotate mummer-annotate || die + dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die insinto /usr/share/${PN}/scripts - doins scripts/{*.awk,*.csh,*.pl} + doins scripts/{*.awk,*.csh,*.pl} || die insinto /usr/share/${PN}/lib doins scripts/Foundation.pm || die |