sci-biology/rebase: Version BUmp; clean old

(Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

6 files changed, 10 insertions, 194 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 6f8be6b54942..d3e99ff0e76d 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.120 2014/03/06 11:25:34 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.121 2014/06/02 08:46:52 jlec Exp $
+
+*rebase-1404 (02 Jun 2014)
+
+  02 Jun 2014; Justin Lecher <jlec@gentoo.org> -rebase-1202.ebuild,
+  -rebase-1303.ebuild, -rebase-1310.ebuild, -rebase-1311.ebuild,
+  -rebase-1312.ebuild, +rebase-1404.ebuild:
+  Version BUmp; clean old
 
 *rebase-1403 (06 Mar 2014)
 
diff --git a/sci-biology/rebase/rebase-1202.ebuild b/sci-biology/rebase/rebase-1202.ebuild
deleted file mode 100644
index 9cfd19d1c170..000000000000
--- a/sci-biology/rebase/rebase-1202.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1202.ebuild,v 1.1 2012/02/03 10:02:46 jlec Exp $
-
-EAPI="3"
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="
-	mirror://gentoo/${P}.tar.xz
-	http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-	if use emboss; then
-		echo; einfo "Indexing Rebase for usage with EMBOSS."
-		mkdir REBASE
-		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-				-protofile proto.${MY_PV} -equivalences \
-				|| die "Indexing Rebase failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		insinto /usr/share/${PN}
-		doins withrefm.${MY_PV} proto.${MY_PV} || die \
-				"Failed to install raw database."
-	fi
-	newdoc REBASE.DOC README || die "Failed to install documentation."
-	if use emboss; then
-		insinto /usr/share/EMBOSS/data/REBASE
-		doins REBASE/embossre.{enz,ref,sup} || die \
-				"Failed to install EMBOSS data files."
-		insinto /usr/share/EMBOSS/data
-		doins REBASE/embossre.equ \
-				|| die "Failed to install enzyme prototypes file."
-	fi
-}
diff --git a/sci-biology/rebase/rebase-1303.ebuild b/sci-biology/rebase/rebase-1303.ebuild
deleted file mode 100644
index 87e0294ef32a..000000000000
--- a/sci-biology/rebase/rebase-1303.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1303.ebuild,v 1.1 2013/02/28 07:50:08 jlec Exp $
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-	if use emboss; then
-		echo; einfo "Indexing Rebase for usage with EMBOSS."
-		mkdir REBASE
-		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-				-protofile proto.${MY_PV} -equivalences \
-				|| die "Indexing Rebase failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		insinto /usr/share/${PN}
-		doins withrefm.${MY_PV} proto.${MY_PV}
-	fi
-	newdoc REBASE.DOC README
-	if use emboss; then
-		insinto /usr/share/EMBOSS/data/REBASE
-		doins REBASE/embossre.{enz,ref,sup}
-		insinto /usr/share/EMBOSS/data
-		doins REBASE/embossre.equ
-	fi
-}
diff --git a/sci-biology/rebase/rebase-1310.ebuild b/sci-biology/rebase/rebase-1310.ebuild
deleted file mode 100644
index 6750fcbc9126..000000000000
--- a/sci-biology/rebase/rebase-1310.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1310.ebuild,v 1.1 2013/10/08 14:15:03 jlec Exp $
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-	if use emboss; then
-		echo; einfo "Indexing Rebase for usage with EMBOSS."
-		mkdir REBASE
-		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-				-protofile proto.${MY_PV} -equivalences \
-				|| die "Indexing Rebase failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		insinto /usr/share/${PN}
-		doins withrefm.${MY_PV} proto.${MY_PV}
-	fi
-	newdoc REBASE.DOC README
-	if use emboss; then
-		insinto /usr/share/EMBOSS/data/REBASE
-		doins REBASE/embossre.{enz,ref,sup}
-		insinto /usr/share/EMBOSS/data
-		doins REBASE/embossre.equ
-	fi
-}
diff --git a/sci-biology/rebase/rebase-1311.ebuild b/sci-biology/rebase/rebase-1311.ebuild
deleted file mode 100644
index e1c12534878c..000000000000
--- a/sci-biology/rebase/rebase-1311.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1311.ebuild,v 1.1 2013/11/02 12:38:52 jlec Exp $
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-	if use emboss; then
-		echo; einfo "Indexing Rebase for usage with EMBOSS."
-		mkdir REBASE
-		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-				-protofile proto.${MY_PV} -equivalences \
-				|| die "Indexing Rebase failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		insinto /usr/share/${PN}
-		doins withrefm.${MY_PV} proto.${MY_PV}
-	fi
-	newdoc REBASE.DOC README
-	if use emboss; then
-		insinto /usr/share/EMBOSS/data/REBASE
-		doins REBASE/embossre.{enz,ref,sup}
-		insinto /usr/share/EMBOSS/data
-		doins REBASE/embossre.equ
-	fi
-}
diff --git a/sci-biology/rebase/rebase-1312.ebuild b/sci-biology/rebase/rebase-1404.ebuild
index 11b2784b958b..f210a6808980 100644
--- a/sci-biology/rebase/rebase-1312.ebuild
+++ b/sci-biology/rebase/rebase-1404.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1312.ebuild,v 1.1 2013/12/01 17:02:19 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1404.ebuild,v 1.1 2014/06/02 08:46:52 jlec Exp $
 
 EAPI=5