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authorAndrey Kislyuk <weaver@gentoo.org>2009-11-06 20:05:03 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2009-11-06 20:05:03 +0000
commit20723041f826270c8e9123aab6230c1fbc138ae0 (patch)
treecbb508609350745bfffbf224bcd80f2be58c99f9 /sci-biology
parentPackage move: sci-biology/dialign-t -> sci-biology/dialign-tx (diff)
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Package move: sci-biology/dialign-t -> sci-biology/dialign-tx
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/dialign-t/ChangeLog41
-rw-r--r--sci-biology/dialign-t/Manifest16
-rw-r--r--sci-biology/dialign-t/dialign-t-0.2.1.ebuild39
-rw-r--r--sci-biology/dialign-t/dialign-t-0.2.2.ebuild39
-rw-r--r--sci-biology/dialign-t/metadata.xml5
5 files changed, 0 insertions, 140 deletions
diff --git a/sci-biology/dialign-t/ChangeLog b/sci-biology/dialign-t/ChangeLog
deleted file mode 100644
index 229f67b529c4..000000000000
--- a/sci-biology/dialign-t/ChangeLog
+++ /dev/null
@@ -1,41 +0,0 @@
-# ChangeLog for sci-biology/dialign-t
-# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/ChangeLog,v 1.9 2008/02/17 08:42:35 opfer Exp $
-
- 17 Feb 2008; Christian Faulhammer <opfer@gentoo.org>
- dialign-t-0.2.2.ebuild:
- stable amd64, bug 207109
-
- 17 Feb 2008; Christian Faulhammer <opfer@gentoo.org>
- dialign-t-0.2.2.ebuild:
- quote variables
-
- 17 Feb 2008; Christian Faulhammer <opfer@gentoo.org>
- dialign-t-0.2.2.ebuild:
- stable x86, bug 207109
-
-*dialign-t-0.2.2 (12 Jul 2007)
-
- 12 Jul 2007; Jeff Gardner <je_fro@gentoo.org> +dialign-t-0.2.2.ebuild:
- New version, add amd64.
-
- 22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog:
- Redigest for Manifest2
-
- 01 Oct 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
- Remove myself as maintainer so it goes to all of the sci-biology team.
-
- 09 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>;
- dialign-t-0.2.1.ebuild:
- x86 stable.
-
- 07 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
- Update to my new email address.
-
-*dialign-t-0.2.1 (21 Feb 2006)
-
- 21 Feb 2006; Donnie Berkholz <dberkholz@gentoo.org>; +metadata.xml,
- +dialign-t-0.2.1.ebuild:
- New multiple sequence alignment package. Perhaps the most accurate and
- fastest local aligner.
-
diff --git a/sci-biology/dialign-t/Manifest b/sci-biology/dialign-t/Manifest
deleted file mode 100644
index 68bbe48ff997..000000000000
--- a/sci-biology/dialign-t/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-DIST DIALIGN-T_0.2.1.tar.gz 1635888 RMD160 a43807668354120b873cad0120a7691b6860ca28 SHA1 5e866806738a9467e19a4e4d8659870bd1d1cb3e SHA256 2249bf9007588e891525b4edc085285f1390c2bf8d42ce327aa9217130d7e930
-DIST DIALIGN-T_0.2.2.tar.gz 1551909 RMD160 413277d62a3a93c871c6825f06786d9c3c462de6 SHA1 71b853caf734f19767a8bba74aa022b1a9dbba13 SHA256 31c2aa031c58854f3c22abf44bf731f6cd67eb86cb46db9ce6b4b49c3011db98
-EBUILD dialign-t-0.2.1.ebuild 1008 RMD160 71fb25ca449a6acd2c38dee9b2d1b1d93c2e211d SHA1 45cff5c6b28f3b36ea6334f2e53c86f2e6738640 SHA256 6f021c9b5da85508d3de01b47ff3861c04be39cab054d6658f38c1ff5b5584bc
-EBUILD dialign-t-0.2.2.ebuild 1020 RMD160 2debf2d08c4d1653124d13df4e6a99aa5dd507ea SHA1 b053b7213fcaf71948501704db020251744cc44f SHA256 ec4c720a45fde42537b1b20bb601e0ea36ea59c7b063c4e30035b58168d7ef4a
-MISC ChangeLog 1319 RMD160 37d5f063c10cf2a90670303584d6d50eb02e008b SHA1 ff9c4c742df05b664f4069287de4e9a384d7a796 SHA256 76be4f06e36524280d2c244d3a1fa855ba4d05c3d67735adc8016b9557b08b0c
-MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.7 (GNU/Linux)
-
-iD8DBQFHt/PdNQqtfCuFneMRAklOAJ4i0g5xJhxejAxf+M5rPWI33KSXqwCcC4ii
-tPOmAZuXcCDnAgCQl6x9lMQ=
-=TTLr
------END PGP SIGNATURE-----
diff --git a/sci-biology/dialign-t/dialign-t-0.2.1.ebuild b/sci-biology/dialign-t/dialign-t-0.2.1.ebuild
deleted file mode 100644
index 87eed28e817e..000000000000
--- a/sci-biology/dialign-t/dialign-t-0.2.1.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/dialign-t-0.2.1.ebuild,v 1.2 2006/07/09 07:17:23 dberkholz Exp $
-
-inherit multilib toolchain-funcs
-
-MY_P="DIALIGN-T_${PV}"
-DESCRIPTION="An improved algorithm for segment-based multiple sequence alignment"
-HOMEPAGE="http://dialign-t.gobics.de/"
-SRC_URI="http://dialign-t.gobics.de/${MY_P}.tar.gz"
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="x86"
-IUSE=""
-RDEPEND=""
-DEPEND="${RDEPEND}"
-S="${WORKDIR}/${MY_P}"
-
-src_compile() {
- cd ${S}/source
- emake clean
- emake \
- CPPFLAGS="${CFLAGS}" \
- || die "make failed"
-}
-
-src_install() {
- DESTTREE="/usr" dobin ${S}/source/dialign-t
- dohtml ${S}/doc/html/*
- dodoc ${S}/doc/user_guide*
- insinto /usr/$(get_libdir)/${PN}/conf
- doins ${S}/conf/*
-}
-
-pkg_postinst() {
- ewarn "The configuration directory is"
- ewarn "${ROOT}usr/$(get_libdir)/${PN}/conf"
- ewarn "You will need to pass this to ${PN} on every run."
-}
diff --git a/sci-biology/dialign-t/dialign-t-0.2.2.ebuild b/sci-biology/dialign-t/dialign-t-0.2.2.ebuild
deleted file mode 100644
index 4ac5b2993a0e..000000000000
--- a/sci-biology/dialign-t/dialign-t-0.2.2.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/dialign-t-0.2.2.ebuild,v 1.4 2008/02/17 08:42:35 opfer Exp $
-
-inherit multilib toolchain-funcs
-
-MY_P="DIALIGN-T_${PV}"
-DESCRIPTION="An improved algorithm for segment-based multiple sequence alignment"
-HOMEPAGE="http://dialign-t.gobics.de/"
-SRC_URI="http://dialign-t.gobics.de/${MY_P}.tar.gz"
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE=""
-RDEPEND=""
-DEPEND="${RDEPEND}"
-S="${WORKDIR}/${MY_P}"
-
-src_compile() {
- cd "${S}"/source
- emake clean
- emake \
- CPPFLAGS="${CFLAGS}" \
- || die "make failed"
-}
-
-src_install() {
- DESTTREE="/usr" dobin "${S}"/source/dialign-t
- dohtml "${S}"/doc/html/*
- dodoc "${S}"/doc/user_guide*
- insinto /usr/$(get_libdir)/${PN}/conf
- doins "${S}"/conf/*
-}
-
-pkg_postinst() {
- ewarn "The configuration directory is"
- ewarn "${ROOT}usr/$(get_libdir)/${PN}/conf"
- ewarn "You will need to pass this to ${PN} on every run."
-}
diff --git a/sci-biology/dialign-t/metadata.xml b/sci-biology/dialign-t/metadata.xml
deleted file mode 100644
index 34294c65ca04..000000000000
--- a/sci-biology/dialign-t/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-biology</herd>
-</pkgmetadata>