diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2013-07-17 07:09:36 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-07-17 07:09:36 +0000 |
| commit | 07b44a8d7051cf8bcdcf841a2fd3d2fa97861aeb (patch) | |
| tree | d86f2f9dbb6c515b19a526468cde314cfb17416d /sci-biology | |
| parent | Version bump. (diff) | |
| download | gentoo-2-07b44a8d7051cf8bcdcf841a2fd3d2fa97861aeb.tar.gz gentoo-2-07b44a8d7051cf8bcdcf841a2fd3d2fa97861aeb.tar.bz2 gentoo-2-07b44a8d7051cf8bcdcf841a2fd3d2fa97861aeb.zip | |
sci-biology/bowtie: Version Bump
(Portage version: 2.2.0_alpha188/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-1.0.0.ebuild | 42 |
2 files changed, 48 insertions, 1 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog index b6687cb2229d..fc0badbf1e6c 100644 --- a/sci-biology/bowtie/ChangeLog +++ b/sci-biology/bowtie/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/bowtie # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.15 2013/03/11 14:53:48 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.16 2013/07/17 07:09:36 jlec Exp $ + +*bowtie-1.0.0 (17 Jul 2013) + + 17 Jul 2013; Justin Lecher <jlec@gentoo.org> +bowtie-1.0.0.ebuild: + Version Bump 11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml: Drop Andrey as maintainer so that bugs get assigned to sci-biology directly diff --git a/sci-biology/bowtie/bowtie-1.0.0.ebuild b/sci-biology/bowtie/bowtie-1.0.0.ebuild new file mode 100644 index 000000000000..d43ba58ccb85 --- /dev/null +++ b/sci-biology/bowtie/bowtie-1.0.0.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-1.0.0.ebuild,v 1.1 2013/07/17 07:09:36 jlec Exp $ + +EAPI=5 + +inherit eutils toolchain-funcs + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86 ~x64-macos" + +DEPEND="app-arch/unzip" +RDEPEND="" + +src_compile() { + unset CFLAGS + emake \ + CC="$(tc-getCC)" \ + CPP="$(tc-getCXX)" \ + CXX="$(tc-getCXX)" \ + EXTRA_FLAGS="${LDFLAGS}" \ + RELEASE_FLAGS="${CXXFLAGS}" +} + +src_install() { + dobin bowtie bowtie-* + exeinto /usr/share/${PN}/scripts + doexe scripts/* + + insinto /usr/share/${PN} + doins -r genomes indexes + + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL doc/README + dohtml manual.html style.css +} |