summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorDanny van Dyk <kugelfang@gentoo.org>2007-01-06 20:52:28 +0000
committerDanny van Dyk <kugelfang@gentoo.org>2007-01-06 20:52:28 +0000
commit0015c2be0de1ad50c62229112c1a07fbb9dbba86 (patch)
tree6714cf5e55409c75b4204cb5df52baddfb214143 /sci-biology/wise
parentQA: Removed unused versions. (diff)
downloadgentoo-2-0015c2be0de1ad50c62229112c1a07fbb9dbba86.tar.gz
gentoo-2-0015c2be0de1ad50c62229112c1a07fbb9dbba86.tar.bz2
gentoo-2-0015c2be0de1ad50c62229112c1a07fbb9dbba86.zip
QA: Removed unused versions.
(Portage version: 2.1.2_pre2-r1) (Signed Manifest commit)
Diffstat (limited to 'sci-biology/wise')
-rw-r--r--sci-biology/wise/Manifest24
-rw-r--r--sci-biology/wise/files/digest-wise-2.1.23c3
-rw-r--r--sci-biology/wise/wise-2.1.23c.ebuild65
3 files changed, 8 insertions, 84 deletions
diff --git a/sci-biology/wise/Manifest b/sci-biology/wise/Manifest
index 5aa29842054d..abea9806f554 100644
--- a/sci-biology/wise/Manifest
+++ b/sci-biology/wise/Manifest
@@ -9,34 +9,26 @@ AUX wise-env 40 RMD160 2ac8408df8a36f789c28d8d55cf892dba78359c5 SHA1 76bce2a14ae
MD5 7321fc88d375cef4db1411e6e6c867ab files/wise-env 40
RMD160 2ac8408df8a36f789c28d8d55cf892dba78359c5 files/wise-env 40
SHA256 de6f742147c43b3820ea261fd158647ae1d2d9e8fe562e0b5c4c0d7e878ced36 files/wise-env 40
-DIST wise2.1.23c.tar.gz 2099297 RMD160 3677760c3cb6dc7000caf2b24937669725b54cb0 SHA1 e518aea38e0b137581865f14c5c0dd00c474b526 SHA256 4200caa7edc81805c17f9032becc0c9d53a20be6693ba1e6dfdfa7a88e6a016a
DIST wise2.2.0.tar.gz 2108151 RMD160 a4292fbfb405d19b628fe5c829d746297e740862 SHA1 77cc08e9cda9416641370c9b45191192fc7cacd3 SHA256 192db34ffa76ef14a9804cc5a7ab72554498284c841f940f8951b4bfae96d780
-EBUILD wise-2.1.23c.ebuild 1809 RMD160 283a07c1907e221e82009322fc69d99d9e68a0d1 SHA1 144e99324c5968c2d513b1b14f74382d1da84567 SHA256 cceaeb48c474cdfa311debf6fac3dd43506a9d23d5a38002f51052d4183ad3c1
-MD5 1af8c0502168ef76a276d372594a634f wise-2.1.23c.ebuild 1809
-RMD160 283a07c1907e221e82009322fc69d99d9e68a0d1 wise-2.1.23c.ebuild 1809
-SHA256 cceaeb48c474cdfa311debf6fac3dd43506a9d23d5a38002f51052d4183ad3c1 wise-2.1.23c.ebuild 1809
EBUILD wise-2.2.0.ebuild 1992 RMD160 08f042a0d66114274fb53e09825e72542a9d8017 SHA1 4b67d463939053e4bffc6888886065af6e222653 SHA256 870d611892d5d9ea940ad1e5ca566dd2edace22850621b353b852451e6edd23c
MD5 cb75d7d3eb6924151331adcb1dc85af7 wise-2.2.0.ebuild 1992
RMD160 08f042a0d66114274fb53e09825e72542a9d8017 wise-2.2.0.ebuild 1992
SHA256 870d611892d5d9ea940ad1e5ca566dd2edace22850621b353b852451e6edd23c wise-2.2.0.ebuild 1992
-MISC ChangeLog 1573 RMD160 a097ff83638dd7da11d3e062cc04bc2eb4fd438b SHA1 37ea73ecbc829aa3791e7967e596395a726a5651 SHA256 ab0f800ba11ea47dcf774d6e6b75db14d45f2703caab96d7de2b4e897989a86b
-MD5 34fb11b76551a2427af72adc2cd38107 ChangeLog 1573
-RMD160 a097ff83638dd7da11d3e062cc04bc2eb4fd438b ChangeLog 1573
-SHA256 ab0f800ba11ea47dcf774d6e6b75db14d45f2703caab96d7de2b4e897989a86b ChangeLog 1573
+MISC ChangeLog 1680 RMD160 fdc4c9a2dbd2678fa753f26df8a66c0f801e1ef6 SHA1 66a305a8f9cd2f5b1838d081f16da6a7808c28f5 SHA256 3ff7cb7e89abf064cb9b94518c3667b4d803436ccbb75677e2c661bb5788b7fb
+MD5 f4f876adcbd393b9893ccdea8d1b1985 ChangeLog 1680
+RMD160 fdc4c9a2dbd2678fa753f26df8a66c0f801e1ef6 ChangeLog 1680
+SHA256 3ff7cb7e89abf064cb9b94518c3667b4d803436ccbb75677e2c661bb5788b7fb ChangeLog 1680
MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 5ea26e49016cda3ac95a41eb97ecd550 files/digest-wise-2.1.23c 238
-RMD160 78984bd7354ee5628140a9a20294293f464e1949 files/digest-wise-2.1.23c 238
-SHA256 7304d1f57a4c7c008925b4a91b77fa64ec1d02d0575a3e7779f421b5391c0926 files/digest-wise-2.1.23c 238
MD5 4c93bc0d8fb6e6f60096991d470c317d files/digest-wise-2.2.0 232
RMD160 ff75c61b2fe24031ee9777872e6254140e888d2f files/digest-wise-2.2.0 232
SHA256 9809ad3161c35ce94a73c205ea93cb0d8e58b652784dd1fb84602e087aa28f4e files/digest-wise-2.2.0 232
-----BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.5 (GNU/Linux)
+Version: GnuPG v1.4.4 (GNU/Linux)
-iD8DBQFFW3ycI1lqEGTUzyQRAq96AKCSEjmA4UbdasHDK2TP9C/XBzFLogCfSYtN
-/E2H1lYJVo4KOQpRKGJRBEM=
-=vs56
+iD8DBQFFoAwO5mJXAu5GbtIRAgySAJoCwegS8txwdThIWfMOT+MShDq/qwCfaBye
+zD/bQi72p2Srcdbfou/QdmI=
+=hYFG
-----END PGP SIGNATURE-----
diff --git a/sci-biology/wise/files/digest-wise-2.1.23c b/sci-biology/wise/files/digest-wise-2.1.23c
deleted file mode 100644
index 59d95fc7512a..000000000000
--- a/sci-biology/wise/files/digest-wise-2.1.23c
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 c058f9c3f4d5621caf581bb736f7b1f1 wise2.1.23c.tar.gz 2099297
-RMD160 3677760c3cb6dc7000caf2b24937669725b54cb0 wise2.1.23c.tar.gz 2099297
-SHA256 4200caa7edc81805c17f9032becc0c9d53a20be6693ba1e6dfdfa7a88e6a016a wise2.1.23c.tar.gz 2099297
diff --git a/sci-biology/wise/wise-2.1.23c.ebuild b/sci-biology/wise/wise-2.1.23c.ebuild
deleted file mode 100644
index 9f0aa79fdc68..000000000000
--- a/sci-biology/wise/wise-2.1.23c.ebuild
+++ /dev/null
@@ -1,65 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.1.23c.ebuild,v 1.3 2006/11/10 23:06:26 ribosome Exp $
-
-inherit eutils toolchain-funcs flag-o-matic
-
-DESCRIPTION="Intelligent algorithms for DNA searches"
-LICENSE="BSD"
-HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
-SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}2/${PN}${PV}.tar.gz"
-
-SLOT="0"
-IUSE="threads"
-KEYWORDS="~alpha ~sparc ia64 x86"
-
-RDEPEND="=sci-biology/hmmer-2.3.2-r1"
-
-DEPEND="${RDEPEND}
- app-shells/tcsh
- dev-lang/perl
- virtual/tetex"
-
-S="${WORKDIR}/${PN}${PV}"
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- if use threads; then
- append-flags "-DPTHREAD"
- sed -e "s/#EXTRALIBS = -lpthread/EXTRALIBS = -lpthread/" -i makefile || die
- fi
- sed -e "s/CC = cc/CC = $(tc-getCC)/" \
- -e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \
- -i makefile || die
- cd "${S}"/docs
-}
-
-src_compile() {
- cd src
- make all || die
- cd "${S}"/docs
- for i in appendix dynamite wise2 wise3arch; do
- latex ${i} || die
- latex ${i} || die
- dvips ${i}.dvi -o || die
- done
-}
-
-src_install() {
- dobin "${S}"/bin/* || die "Installing program failed"
- dolib "${S}"/base/libwisebase.a || die "Failed to install libwisebase"
- dolib "${S}"/dynlibsrc/libdyna.a || die "Failed to install libdyna"
- dobin "${S}"/dynlibsrc/testgendb || die "Failed to install testgendb"
- dolib "${S}"/models/libmodel.a || die "Failed to install libmodel"
- insinto /usr/share/${PN}
- doins -r "${S}"/wisecfg || die "Failed to install wisecfg"
- insinto /usr/share/doc/${PF}
- doins "${S}"/docs/*.ps || die "Failed to install documentation"
- newenvd "${FILESDIR}"/${PN}-env 24wise || die "Failed to install env file"
-}
-
-src_test() {
- cd "${S}"/src
- WISECONFIGDIR="${S}/wisecfg" make test || die
-}