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author | Andrey Kislyuk <weaver@gentoo.org> | 2009-06-21 14:49:00 +0000 |
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committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-06-21 14:49:00 +0000 |
commit | 693f95701829ee49e8bd52b8ab5c4c7ef5041c66 (patch) | |
tree | f3787fbdcf5e0871c05d4a9ce3acb3b17971aa70 /sci-biology/velvet | |
parent | Unmask USE="mmx sse 3dnow 3dnowext" for >= mpg123-1.8.1. (diff) | |
download | gentoo-2-693f95701829ee49e8bd52b8ab5c4c7ef5041c66.tar.gz gentoo-2-693f95701829ee49e8bd52b8ab5c4c7ef5041c66.tar.bz2 gentoo-2-693f95701829ee49e8bd52b8ab5c4c7ef5041c66.zip |
Version bump
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/velvet')
-rw-r--r-- | sci-biology/velvet/ChangeLog | 7 | ||||
-rw-r--r-- | sci-biology/velvet/velvet-0.7.34.ebuild | 40 |
2 files changed, 46 insertions, 1 deletions
diff --git a/sci-biology/velvet/ChangeLog b/sci-biology/velvet/ChangeLog index 705ee8914c49..6e03c332fbe9 100644 --- a/sci-biology/velvet/ChangeLog +++ b/sci-biology/velvet/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/velvet # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.1 2009/06/05 10:06:43 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.2 2009/06/21 14:49:00 weaver Exp $ + +*velvet-0.7.34 (21 Jun 2009) + + 21 Jun 2009; Andrey Kislyuk <weaver@gentoo.org> +velvet-0.7.34.ebuild: + Version bump *velvet-0.7.31 (05 Jun 2009) diff --git a/sci-biology/velvet/velvet-0.7.34.ebuild b/sci-biology/velvet/velvet-0.7.34.ebuild new file mode 100644 index 000000000000..1caac6c8fcc8 --- /dev/null +++ b/sci-biology/velvet/velvet-0.7.34.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.34.ebuild,v 1.1 2009/06/21 14:49:00 weaver Exp $ + +EAPI="2" + +MY_P="${PN}_${PV}" + +DESCRIPTION="A sequence assembler for very short reads" +HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/" +SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + rm -rf "${S}"/third-party/zlib* + sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \ + -e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \ + -e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \ + "${S}"/Makefile || die + sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die +} + +src_compile() { + emake -j1 || die + emake -j1 color || die +} + +src_install() { + dobin velvet{g,h,g_de,h_de} third-party/layout/graph2.py third-party/afg_handling/*.pl || die + dodoc Manual.pdf CREDITS.txt +} |