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| author |   Olivier Fisette <ribosome@gentoo.org> | 2009-09-01 19:16:18 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2009-09-01 19:16:18 +0000 |
| commit | df1ccbc033e0e968ab387fe9e5868c4eb690826f (patch) | |
| tree | 8272bd61caee58d1d193ca77ac258c626bd6ba55 /sci-biology/rebase | |
| parent | Q.A. fixes. (diff) | |
| download | gentoo-2-df1ccbc033e0e968ab387fe9e5868c4eb690826f.tar.gz gentoo-2-df1ccbc033e0e968ab387fe9e5868c4eb690826f.tar.bz2 gentoo-2-df1ccbc033e0e968ab387fe9e5868c4eb690826f.zip | |
New upstream version.
(Portage version: 2.2_rc40/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/rebase')
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-909.ebuild | 45 |
2 files changed, 51 insertions, 1 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index 574b728d9f06..7b33812c769c 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.90 2009/09/01 18:17:52 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.91 2009/09/01 19:16:18 ribosome Exp $ + +*rebase-909 (01 Sep 2009) + + 01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> +rebase-909.ebuild: + New upstream version. 01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> rebase-905.ebuild: Stabilised on amd64 and 86. diff --git a/sci-biology/rebase/rebase-909.ebuild b/sci-biology/rebase/rebase-909.ebuild new file mode 100644 index 000000000000..173dcddb7879 --- /dev/null +++ b/sci-biology/rebase/rebase-909.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-909.ebuild,v 1.1 2009/09/01 19:16:18 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )" +RDEPEND="${DEPEND}" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} -equivalences \ + || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins REBASE/embossre.equ \ + || die "Failed to install enzyme prototypes file." + fi +} |