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| author |   Olivier Fisette <ribosome@gentoo.org> | 2007-08-20 17:25:03 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2007-08-20 17:25:03 +0000 |
| commit | 231a0e37de915405ccf5df9b810ca48fab3bf96d (patch) | |
| tree | a9b34bca92c75fe51f1ba3586895b3d5be6d0626 /sci-biology/rebase | |
| parent | The Czech linguas variable is cs, not cz. Thanks to Mr_Bones_ for pointing i... (diff) | |
| download | gentoo-2-231a0e37de915405ccf5df9b810ca48fab3bf96d.tar.gz gentoo-2-231a0e37de915405ccf5df9b810ca48fab3bf96d.tar.bz2 gentoo-2-231a0e37de915405ccf5df9b810ca48fab3bf96d.zip | |
New upstream version.
(Portage version: 2.1.2.11)
Diffstat (limited to 'sci-biology/rebase')
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/rebase/files/digest-rebase-708 | 3 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-708.ebuild | 44 |
3 files changed, 53 insertions, 1 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index 72d3462e469d..d2f125044506 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.85 2007/07/18 01:03:53 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.86 2007/08/20 17:25:03 ribosome Exp $ + +*rebase-708 (20 Aug 2007) + + 20 Aug 2007; Olivier Fisette <ribosome@gentoo.org> +rebase-708.ebuild: + New upstream version. 18 Jul 2007; Olivier Fisette <ribosome@gentoo.org> -rebase-704.ebuild, -rebase-705.ebuild: diff --git a/sci-biology/rebase/files/digest-rebase-708 b/sci-biology/rebase/files/digest-rebase-708 new file mode 100644 index 000000000000..a9dc9fb61ae9 --- /dev/null +++ b/sci-biology/rebase/files/digest-rebase-708 @@ -0,0 +1,3 @@ +MD5 0d52f71a759f4bd9c31aa27f9edc3f7c rebase-708.tar.bz2 185379 +RMD160 7a70c90cec198e0bc60bb7d16d00a9080b5d11c0 rebase-708.tar.bz2 185379 +SHA256 0031da580a808a096ca596b27ec0fb1167128272d030332031b901b00115c305 rebase-708.tar.bz2 185379 diff --git a/sci-biology/rebase/rebase-708.ebuild b/sci-biology/rebase/rebase-708.ebuild new file mode 100644 index 000000000000..629da51a1150 --- /dev/null +++ b/sci-biology/rebase/rebase-708.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-708.ebuild,v 1.1 2007/08/20 17:25:03 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} -equivalences \ + || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins REBASE/embossre.equ \ + || die "Failed to install enzyme prototypes file." + fi +} |