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authorKacper Kowalik <xarthisius@gentoo.org>2010-09-12 17:19:46 +0000
committerKacper Kowalik <xarthisius@gentoo.org>2010-09-12 17:19:46 +0000
commitc485eb4682597e4fef31a3e6f0e2aeface5e14df (patch)
treea5e79bad88e0214f4ab74347240096974c28b709 /sci-biology/paml
parentFix building with perl useflag enabled. Per bug #336839. (diff)
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Drop old buggy versions.
(Portage version: 2.1.9/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/paml')
-rw-r--r--sci-biology/paml/ChangeLog6
-rw-r--r--sci-biology/paml/paml-4.3a.ebuild48
-rw-r--r--sci-biology/paml/paml-4.3b.ebuild48
3 files changed, 5 insertions, 97 deletions
diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog
index 6a1d289c3395..2d77e45920b4 100644
--- a/sci-biology/paml/ChangeLog
+++ b/sci-biology/paml/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/paml
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.14 2010/09/12 16:16:35 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.15 2010/09/12 17:19:45 xarthisius Exp $
+
+ 12 Sep 2010; Kacper Kowalik <xarthisius@gentoo.org> -paml-4.3a.ebuild,
+ -paml-4.3b.ebuild:
+ Drop old buggy versions.
12 Sep 2010; Markos Chandras <hwoarang@gentoo.org> paml-4.4c.ebuild:
Stable on amd64 wrt bug #335649
diff --git a/sci-biology/paml/paml-4.3a.ebuild b/sci-biology/paml/paml-4.3a.ebuild
deleted file mode 100644
index 3f623de29001..000000000000
--- a/sci-biology/paml/paml-4.3a.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.3a.ebuild,v 1.3 2010/02/09 11:17:38 pacho Exp $
-
-EAPI="2"
-
-inherit toolchain-funcs
-
-MY_P="${PN}43"
-DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
-HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
-SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"
-
-LICENSE="free-noncomm"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE=""
-
-RDEPEND=""
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- sed -i 's/-static//' "${S}/src/Makefile.UNIX" || die
-}
-
-src_compile() {
- cd src
- emake \
- -f Makefile.UNIX \
- CC="$(tc-getCC)" \
- CFLAGS="${CFLAGS}" \
- || die "make failed"
-}
-
-src_install() {
- pushd "${S}"/src
- dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 || die
- popd
- dodoc README.txt doc/*
- insinto /usr/share/${PN}/control
- doins *.ctl || die "Failed to install control files"
- insinto /usr/share/${PN}/dat
- doins stewart* *.dat dat/* || die "Failed to install data files"
- insinto /usr/share/${PN}
- doins -r examples/ || die "Failed to install examples"
-}
diff --git a/sci-biology/paml/paml-4.3b.ebuild b/sci-biology/paml/paml-4.3b.ebuild
deleted file mode 100644
index d3d5016451e9..000000000000
--- a/sci-biology/paml/paml-4.3b.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.3b.ebuild,v 1.1 2009/12/28 19:43:37 weaver Exp $
-
-EAPI="2"
-
-inherit toolchain-funcs
-
-MY_P="${PN}43"
-DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
-HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
-SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"
-
-LICENSE="free-noncomm"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE=""
-
-RDEPEND=""
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- sed -i 's/-static//' "${S}/src/Makefile.UNIX" || die
-}
-
-src_compile() {
- cd src
- emake \
- -f Makefile.UNIX \
- CC="$(tc-getCC)" \
- CFLAGS="${CFLAGS}" \
- || die "make failed"
-}
-
-src_install() {
- pushd "${S}"/src
- dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 || die
- popd
- dodoc README.txt doc/*
- insinto /usr/share/${PN}/control
- doins *.ctl || die "Failed to install control files"
- insinto /usr/share/${PN}/dat
- doins stewart* *.dat dat/* || die "Failed to install data files"
- insinto /usr/share/${PN}
- doins -r examples/ || die "Failed to install examples"
-}