sci-biology/meme: Rename all binaries to meme-*; should fix all collisions in future, #458208; drop old

(Portage version: 2.2.0_alpha163/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)

3 files changed, 13 insertions, 86 deletions

diff --git a/sci-biology/meme/ChangeLog b/sci-biology/meme/ChangeLog
index eda8367c9c41..b1baa394b9f0 100644
--- a/sci-biology/meme/ChangeLog
+++ b/sci-biology/meme/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/meme
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.23 2013/02/01 14:51:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.24 2013/03/01 12:43:54 jlec Exp $
+
+*meme-4.8.1-r2 (01 Mar 2013)
+
+  01 Mar 2013; Justin Lecher <jlec@gentoo.org> -meme-4.8.1.ebuild,
+  -meme-4.8.1-r1.ebuild, +meme-4.8.1-r2.ebuild:
+  Rename all binaries to meme-*; should fix all collisions in future, #458208;
+  drop old
 
 *meme-4.8.1-r1 (01 Feb 2013)
 
diff --git a/sci-biology/meme/meme-4.8.1-r1.ebuild b/sci-biology/meme/meme-4.8.1-r2.ebuild
index 50c2f7fe6aee..abc810087e9a 100644
--- a/sci-biology/meme/meme-4.8.1-r1.ebuild
+++ b/sci-biology/meme/meme-4.8.1-r2.ebuild
@@ -1,6 +1,6 @@
 ## Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-4.8.1-r1.ebuild,v 1.1 2013/02/01 14:51:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-4.8.1-r2.ebuild,v 1.1 2013/03/01 12:43:54 jlec Exp $
 
 EAPI=4
 
@@ -63,10 +63,12 @@ src_test() {
 }
 
 src_install() {
+	local i
 	default
 
-	mv "${ED}"/usr/bin/{,meme-}tree || die
-	mv "${ED}"/usr/bin/{,meme-}readseq || die
+	for i in "${ED}"/usr/bin/*; do
+		"${ED}"/usr/bin/{,meme-}${i} || die
+	done
 
 	echo "PATH=/opt/${PN}/bin" > 99${PN}
 	doenvd 99${PN}
diff --git a/sci-biology/meme/meme-4.8.1.ebuild b/sci-biology/meme/meme-4.8.1.ebuild
deleted file mode 100644
index dc154dd57195..000000000000
--- a/sci-biology/meme/meme-4.8.1.ebuild
+++ /dev/null
@@ -1,82 +0,0 @@
-## Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-4.8.1.ebuild,v 1.6 2013/02/01 14:51:24 jlec Exp $
-
-EAPI=4
-
-PYTHON_DEPEND="2"
-
-inherit autotools eutils python
-
-DESCRIPTION="The MEME/MAST system - Motif discovery and search"
-HOMEPAGE="http://meme.sdsc.edu/meme"
-SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz"
-
-LICENSE="meme"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="debug examples mpi"
-
-DEPEND="
-	!app-text/tree
-	app-shells/tcsh
-	dev-libs/libxml2:2
-	dev-libs/libxslt
-	!sci-biology/readseq
-	mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${PN}_${PV}"
-
-#pkg_setup() {
-	# generate meme group to restrict logging to /var/log/meme
-#	enewgroup meme
-#	python_pkg_setup
-#	python_set_active_version 2
-#}
-
-src_prepare() {
-	use examples || sed -e '/SUBDIRS/s:examples::g' -i doc/Makefile.am
-	sed \
-		-e '/flags/s:-O3::g' \
-		-e '/opt/s:-O::g' \
-		-e '/debug/s:-ggdb::' \
-		-e '/debug/s:-g::' \
-		-e 's:CFLAGS=:CFLAGS+=:g' \
-		-i configure.ac || die
-	epatch \
-		"${FILESDIR}"/${P}-Makefile.am.patch
-	eautoreconf
-}
-
-src_configure() {
-	MY_PREFIX="${ROOT}opt/meme"
-	USE_DISABLE_MPI=""; if ! use mpi; then USE_DISABLE_MPI="--enable-serial"; fi
-	econf \
-		--sysconfdir="${EPREFIX}/etc/meme" \
-		--with-logs="${ROOT}var/log/meme" \
-		$(use_enable debug) \
-		$USE_DISABLE_MPI
-}
-
-src_test() {
-	# bug #297070
-	emake -j1 test
-}
-
-src_install() {
-	default
-
-	echo "PATH=/opt/${PN}/bin" > 99${PN}
-	doenvd 99${PN}
-
-	# allow logging only for members of meme group
-	# diropts -m 0770 -g meme -o root
-	diropts -m ugo+rwxt -o root
-	keepdir /var/log/meme
-}
-
-#pkg_postinst() {
-#	einfo 'Log files are produced in the "/var/log/meme" directory. Users'
-#	einfo 'need to be part of the meme group to use this facility.'
-#}