Removed obsolete version

(Portage version: 2.0.53)

4 files changed, 5 insertions, 76 deletions

diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog
index 9c6b451e2327..23e3fd2a5d4c 100644
--- a/sci-biology/hmmer/ChangeLog
+++ b/sci-biology/hmmer/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/hmmer
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.10 2006/01/21 16:48:49 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.11 2006/01/21 18:01:18 ribosome Exp $
+
+  21 Jan 2006; Olivier Fisette <ribosome@gentoo.org>
+  -files/Makefile-hmmer-2.2g.patch, -hmmer-2.3.2.ebuild:
+  Removed obsolete version.
 
 *hmmer-2.3.2-r2 (21 Jan 2006)
 
diff --git a/sci-biology/hmmer/files/Makefile-hmmer-2.2g.patch b/sci-biology/hmmer/files/Makefile-hmmer-2.2g.patch
deleted file mode 100644
index fe9c8fdbcbfa..000000000000
--- a/sci-biology/hmmer/files/Makefile-hmmer-2.2g.patch
+++ /dev/null
@@ -1,33 +0,0 @@
---- Makefile.in.orig	2003-05-05 15:21:41.000000000 +0100
-+++ Makefile.in	2003-05-05 15:22:11.000000000 +0100
-@@ -84,6 +84,12 @@
- 	sindex\
- 	shuffle\
- 	sreformat
-+SQUIDMANS = afetch\
-+	alistat\
-+	seqstat\
-+	sfetch\
-+	shuffle\
-+	sreformat
- 
- # all: Compile everything (except the testsuite),
- #      and stick the supported programs in binaries/
-@@ -146,13 +152,14 @@
- 	for file in $(PROGS) $(SQUIDPROGS) $(PVMPROGS); do\
- 	   cp binaries/$$file $(BINDIR)/;\
- 	done
--	for file in hmmer $(PROGS) $(SQUIDPROGS); do\
-+	for file in hmmer $(PROGS); do\
- 	   $(INSTMAN) documentation/man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\
-+	   chmod 0644 $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\
- 	done
--	for file in $(SQUIDPROGS); do\
-+	for file in $(SQUIDMANS); do\
- 	   $(INSTMAN) squid/Man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\
-+	   chmod 0644 $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\
- 	done
--
- # "make clean" removes almost everything except configuration files
- #              and binaries.
- clean:
diff --git a/sci-biology/hmmer/files/digest-hmmer-2.3.2 b/sci-biology/hmmer/files/digest-hmmer-2.3.2
deleted file mode 100644
index a923f14534a4..000000000000
--- a/sci-biology/hmmer/files/digest-hmmer-2.3.2
+++ /dev/null
@@ -1 +0,0 @@
-MD5 5f073340c0cf761288f961a73821228a hmmer-2.3.2.tar.gz 1024933
diff --git a/sci-biology/hmmer/hmmer-2.3.2.ebuild b/sci-biology/hmmer/hmmer-2.3.2.ebuild
deleted file mode 100644
index 2720112a39cb..000000000000
--- a/sci-biology/hmmer/hmmer-2.3.2.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-2.3.2.ebuild,v 1.2 2005/02/08 00:15:30 augustus Exp $
-
-DESCRIPTION="HMMER - Biological sequence analysis with profile HMMs"
-HOMEPAGE="http://hmmer.wustl.edu/"
-SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz"
-LICENSE="GPL-2"
-
-SLOT="0"
-KEYWORDS="x86 amd64 ~ppc-macos ~ppc"
-IUSE=""
-
-src_compile() {
-	./configure \
-		--host=${CHOST} \
-		--prefix=${D}/usr \
-		--exec_prefix=${D}/usr \
-		--mandir=${D}/usr/share/man || die
-
-#	econf || die
-	emake || die
-}
-
-src_install() {
-	einstall || die
-
-	dodoc 00README NOTES
-
-	insinto /usr/share/doc/${PF}
-	doins Userguide.pdf
-
-	cd squid
-
-	dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate
-	dolib libsquid.a
-}
-
-src_test() {
-	make check
-}