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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-03-19 15:12:35 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-03-19 15:12:35 +0000 |
| commit | 5f2d0ce9f6b9a3781a49773b791cd0b7bea99103 (patch) | |
| tree | fab794081bfbf988a4aedc11ea0115bf6c41ccd6 /sci-biology/glimmerhmm | |
| parent | Marking glibc-2.8_p20080602-r1 ppc for bug 247553 (diff) | |
| download | gentoo-2-5f2d0ce9f6b9a3781a49773b791cd0b7bea99103.tar.gz gentoo-2-5f2d0ce9f6b9a3781a49773b791cd0b7bea99103.tar.bz2 gentoo-2-5f2d0ce9f6b9a3781a49773b791cd0b7bea99103.zip | |
QA, keyword ~amd64
(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)
Diffstat (limited to 'sci-biology/glimmerhmm')
| -rw-r--r-- | sci-biology/glimmerhmm/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild | 34 |
2 files changed, 25 insertions, 16 deletions
diff --git a/sci-biology/glimmerhmm/ChangeLog b/sci-biology/glimmerhmm/ChangeLog index 2d5f928e70d3..4cef94853e51 100644 --- a/sci-biology/glimmerhmm/ChangeLog +++ b/sci-biology/glimmerhmm/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/glimmerhmm -# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/ChangeLog,v 1.1 2008/09/07 13:11:13 weaver Exp $ +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/ChangeLog,v 1.2 2009/03/19 15:12:35 weaver Exp $ + + 19 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + QA, keyword ~amd64 *glimmerhmm-3.0.1 (07 Sep 2008) diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild index 5ed407386afa..a0a78a26e487 100644 --- a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild +++ b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild @@ -1,6 +1,8 @@ -# Copyright 1999-2008 Gentoo Foundation +# Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild,v 1.2 2008/09/07 14:37:31 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild,v 1.3 2009/03/19 15:12:35 weaver Exp $ + +inherit toolchain-funcs MY_P=GlimmerHMM @@ -11,35 +13,39 @@ SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz" LICENSE="Artistic" SLOT="0" IUSE="" -KEYWORDS="~x86" +KEYWORDS="~amd64 ~x86" DEPEND="" RDEPEND="" S="${WORKDIR}/${MY_P}" -src_compile() { +src_unpack() { + unpack ${A} sed -i -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \ - -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' train/trainGlimmerHMM || die "sed failed" - sed -i 's/^CFLAGS[ ]*=.*//' */makefile + -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' "${S}/train/trainGlimmerHMM" || die + sed -i -e 's/^CFLAGS[ ]*=.*//' \ + -e 's/C *=.*/C='$(tc-getCC)'/' \ + -e 's/CC *=.*/CC='$(tc-getCXX)'/' \ + "${S}"/*/makefile || die +} - cd sources - emake || die "emake failed in sources" - cd "${S}/train" || die "failed to cd" - emake || die "emake failed in train" +src_compile() { + emake -C "${S}/sources" || die "emake failed in sources" + emake -C "${S}/train" || die "emake failed in train" } src_install() { - dobin sources/glimmerhmm train/trainGlimmerHMM + dobin sources/glimmerhmm train/trainGlimmerHMM || die dodir /usr/share/${PN}/{lib,models,training_utils} insinto /usr/share/${PN}/lib - doins train/*.pm + doins train/*.pm || die insinto /usr/share/${PN}/models - doins -r trained_dir/* + doins -r trained_dir/* || die insinto /usr/share/${PN}/training_utils insopts -m755 - doins train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} + doins train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} || die dodoc README.first train/readme.train } |