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authorJustin Lecher <jlec@gentoo.org>2013-03-11 15:02:36 +0000
committerJustin Lecher <jlec@gentoo.org>2013-03-11 15:02:36 +0000
commit4ffc9ee2f87e2e6730693cc4587dda8cc3c1faba (patch)
treeb72d6f7dd8986fd0a55c1555e62291f99287b58a /sci-biology/clustalx
parentsci-biology/diya: Drop Andrey as maintainer so that bugs get assigned to sci-... (diff)
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sci-biology/clustalx: Drop Andrey as maintainer so that bugs get assigned to sci-biology directly; drop old ebuild because of missing deps
(Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-biology/clustalx')
-rw-r--r--sci-biology/clustalx/ChangeLog7
-rw-r--r--sci-biology/clustalx/clustalx-1.83-r2.ebuild63
-rw-r--r--sci-biology/clustalx/metadata.xml6
3 files changed, 7 insertions, 69 deletions
diff --git a/sci-biology/clustalx/ChangeLog b/sci-biology/clustalx/ChangeLog
index cbf5ca5d8896..13830d677d82 100644
--- a/sci-biology/clustalx/ChangeLog
+++ b/sci-biology/clustalx/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/clustalx
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.28 2013/03/02 23:15:41 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.29 2013/03/11 15:02:36 jlec Exp $
+
+ 11 Mar 2013; Justin Lecher <jlec@gentoo.org> -clustalx-1.83-r2.ebuild,
+ metadata.xml:
+ Drop Andrey as maintainer so that bugs get assigned to sci-biology directly;
+ drop old ebuild because of missing deps
02 Mar 2013; Markos Chandras <hwoarang@gentoo.org> clustalx-2.1.ebuild:
Move Qt dependencies to the new category
diff --git a/sci-biology/clustalx/clustalx-1.83-r2.ebuild b/sci-biology/clustalx/clustalx-1.83-r2.ebuild
deleted file mode 100644
index d0550de6cf78..000000000000
--- a/sci-biology/clustalx/clustalx-1.83-r2.ebuild
+++ /dev/null
@@ -1,63 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/clustalx-1.83-r2.ebuild,v 1.11 2012/10/24 19:29:39 ulm Exp $
-
-EAPI=1
-
-inherit toolchain-funcs eutils
-
-DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
-HOMEPAGE="http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/"
-SRC_URI="ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalX/clustalx1.83.sun.tar.gz"
-LICENSE="public-domain"
-
-SLOT="0"
-KEYWORDS="~sparc"
-IUSE=""
-
-DEPEND="sci-biology/clustalw:1
- sci-biology/ncbi-tools
- >=x11-libs/motif-2.3:0
- x11-libs/libXpm"
-
-S="${WORKDIR}/${PN}${PV}.sun"
-
-pkg_setup() {
- if ! built_with_use sci-biology/ncbi-tools X; then
- echo
- eerror "ClustalX requires the Vibrant toolkit, which is part of the"
- eerror "optional X support in the \"sci-biology/ncbi-tools\" package."
- eerror "To install ClustalX on your system, first recompile"
- eerror "\"sci-biology/ncbi-tools\" with the \"X\" USE flag enabled,"
- eerror "then try to install ClustalX again."
- die "X support not enabled in \"sci-biology/ncbi-tools\""
- fi
-}
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- cp makefile.linux makefile
- sed -e "s/CC = cc/CC = $(tc-getCC)/" \
- -e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \
- -e "s/LFLAGS = -O -lm/LFLAGS = -lm ${CFLAGS}/" \
- -e "s%-I/usr/bio/src/ncbi/include%-I/usr/include/ncbi%" \
- -e "s%-L/usr/bio/src/ncbi/lib -L/usr/ccs/lib -L/usr/X11R6/lib%-L/usr/lib -L/usr/X11R6/lib%" \
- -i makefile || die
- sed -i -e "s%clustalx_help%/usr/share/doc/${PF}/clustalx_help%" clustalx.c || die
- sed -i -e "s%clustalw.doc%../clustalw.doc%" clustalx.html || die
-}
-
-src_compile() {
- make || die
-}
-
-src_install() {
- dobin clustalx
-
- dodoc README_X
- dohtml clustalx.html
-
- insinto /usr/share/doc/${PF}
- doins clustalx_help clustalw.doc
-}
diff --git a/sci-biology/clustalx/metadata.xml b/sci-biology/clustalx/metadata.xml
index 3302123e5718..f17a827e3101 100644
--- a/sci-biology/clustalx/metadata.xml
+++ b/sci-biology/clustalx/metadata.xml
@@ -1,9 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>weaver@gentoo.org</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
+ <herd>sci-biology</herd>
</pkgmetadata>