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| author |   Olivier Fisette <ribosome@gentoo.org> | 2005-11-19 17:24:30 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2005-11-19 17:24:30 +0000 |
| commit | 59a04bd52342f204fb78dfcded7a098f73bd89f4 (patch) | |
| tree | bf30a8de6daca7595872e3623555f9fcfe464ed1 /sci-biology/clustalw-mpi | |
| parent | Added local USE flags "mpi_njtree" and "static_pairalign" for "sci-biology/cl... (diff) | |
| download | gentoo-2-59a04bd52342f204fb78dfcded7a098f73bd89f4.tar.gz gentoo-2-59a04bd52342f204fb78dfcded7a098f73bd89f4.tar.bz2 gentoo-2-59a04bd52342f204fb78dfcded7a098f73bd89f4.zip | |
Initial import (bug #112769)
(Portage version: 2.0.51.22-r3)
Diffstat (limited to 'sci-biology/clustalw-mpi')
| -rw-r--r-- | sci-biology/clustalw-mpi/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-biology/clustalw-mpi/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild | 42 | ||||
| -rw-r--r-- | sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13 | 1 | ||||
| -rw-r--r-- | sci-biology/clustalw-mpi/metadata.xml | 9 |
5 files changed, 65 insertions, 0 deletions
diff --git a/sci-biology/clustalw-mpi/ChangeLog b/sci-biology/clustalw-mpi/ChangeLog new file mode 100644 index 000000000000..e24649b67f85 --- /dev/null +++ b/sci-biology/clustalw-mpi/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for sci-biology/clustalw-mpi +# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw-mpi/ChangeLog,v 1.1 2005/11/19 17:24:29 ribosome Exp $ + +*clustalw-mpi-0.13 (19 Nov 2005) + + 19 Nov 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +clustalw-mpi-0.13.ebuild: + Initial import. Original ebuild submitted by Brady Catherman + <bradyc@uidaho.edu> (bug #112769). + diff --git a/sci-biology/clustalw-mpi/Manifest b/sci-biology/clustalw-mpi/Manifest new file mode 100644 index 000000000000..e43494ef7bda --- /dev/null +++ b/sci-biology/clustalw-mpi/Manifest @@ -0,0 +1,2 @@ +MD5 a1c7305f2c74ffa5dc4544e69129b74b clustalw-mpi-0.13.ebuild 1098 +MD5 a3271acbd5ef3270f2823a55c22dc7cc files/digest-clustalw-mpi-0.13 69 diff --git a/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild b/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild new file mode 100644 index 000000000000..6888d8d985e8 --- /dev/null +++ b/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild,v 1.1 2005/11/19 17:24:29 ribosome Exp $ + +inherit toolchain-funcs + +DESCRIPTION="A parallel (MPI) implemention of the Clustal-W general purpose multiple alignment program" +LICENSE="public-domain" +HOMEPAGE="http://web.bii.a-star.edu.sg/~kuobin/clustalw-mpi/" +SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz" + +SLOT="0" +IUSE="mpi_njtree static_pairalign" +KEYWORDS="~x86" + +DEPEND="virtual/libc + virtual/mpi" + +src_unpack() { + unpack ${A} + cd "${S}" + sed -e "s/CFLAGS = -c -O3/CFLAGS = -c ${CFLAGS}/" \ + -e "s/LFLAGS = -lm/LFLAGS = -lm ${CFLAGS}/" -i Makefile || \ + die "Failed to apply CFLAGS." + if use mpi_njtree; then + sed -e "s/TREES_FLAG/#TREES_FLAG/" -i Makefile || \ + die "Failed to configure MPI code for NJ trees." + fi + if use static_pairalign; then + sed -e "s/DDYNAMIC_SCHEDULING/DSTATIC_SCHEDULING/" -i Makefile || \ + die "Failed to configure static scheduling for pair alignments." + fi +} + +src_compile() { + emake || die +} + +src_install() { + dobin clustalw-mpi || die + newdoc README.${PN} README || die +} diff --git a/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13 b/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13 new file mode 100644 index 000000000000..66be8b19cfe9 --- /dev/null +++ b/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13 @@ -0,0 +1 @@ +MD5 f4c24336764eff6be73322bfc7167f16 clustalw-mpi-0.13.tar.gz 154911 diff --git a/sci-biology/clustalw-mpi/metadata.xml b/sci-biology/clustalw-mpi/metadata.xml new file mode 100644 index 000000000000..e9391a41a838 --- /dev/null +++ b/sci-biology/clustalw-mpi/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> +</pkgmetadata> |