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| author |   Paweł Hajdan <phajdan.jr@gentoo.org> | 2012-03-31 17:03:18 +0000 |
|---|---|---|
| committer | Paweł Hajdan <phajdan.jr@gentoo.org> | 2012-03-31 17:03:18 +0000 |
| commit | 8ba2860ae7c5f5429e27ed1edd8753981376059a (patch) | |
| tree | 65ab7f40697f559187fc6303fba1f00594969f7c /sci-biology/cd-hit | |
| parent | add ~arm, bug #402989 (diff) | |
| download | gentoo-2-8ba2860ae7c5f5429e27ed1edd8753981376059a.tar.gz gentoo-2-8ba2860ae7c5f5429e27ed1edd8753981376059a.tar.bz2 gentoo-2-8ba2860ae7c5f5429e27ed1edd8753981376059a.zip | |
Add upstream remote-id annotations using tools by Corentin Chary, bug #406287.
Diffstat (limited to 'sci-biology/cd-hit')
| -rw-r--r-- | sci-biology/cd-hit/metadata.xml | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/sci-biology/cd-hit/metadata.xml b/sci-biology/cd-hit/metadata.xml index 0066dc245f77..e4184a444391 100644 --- a/sci-biology/cd-hit/metadata.xml +++ b/sci-biology/cd-hit/metadata.xml @@ -1,17 +1,15 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> -<herd>sci-biology</herd> -<maintainer> - <email>jlec@gentoo.org</email> -</maintainer> -<longdescription> -CD-HIT is a very widely used program for clustering and comparing large sets + <herd>sci-biology</herd> + <maintainer> + <email>jlec@gentoo.org</email> + </maintainer> + <longdescription>CD-HIT is a very widely used program for clustering and comparing large sets of protein or nucleotide sequences. CD-HIT is very fast and can handle extremely large databases. CD-HIT helps to significantly reduce the computational and manual efforts in many sequence analysis tasks and aids in understanding the data structure and correct the bias within a dataset. - The CD-HIT package has CD-HIT, CD-HIT-2D, CD-HIT-EST, CD-HIT-EST-2D, CD-HIT-454, CD-HIT-PARA, PSI-CD-HIT and over a dozen scripts. CD-HIT (CD-HIT-EST) clusters similar proteins (DNAs) into clusters that meet a @@ -19,6 +17,8 @@ user-defined similarity threshold. CD-HIT-2D (CD-HIT-EST-2D) compares 2 datasets and identifies the sequences in db2 that are similar to db1 above a threshold. CD-HIT-454 is a program to identify natural and artificial duplicates from pyrosequencing reads. The usage of other programs and -scripts can be found in CD-HIT user's guide. -</longdescription> +scripts can be found in CD-HIT user's guide.</longdescription> + <upstream> + <remote-id type="google-code">cdhit</remote-id> + </upstream> </pkgmetadata> |