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authorJustin Lecher <jlec@gentoo.org>2013-02-18 12:32:22 +0000
committerJustin Lecher <jlec@gentoo.org>2013-02-18 12:32:22 +0000
commitb705d94ee77402265d27cd1c40f461fc5037bbcf (patch)
tree58e5e9ff7ac9c8f5b5af4963847360097c01595b /sci-biology/allpathslg
parentVersion bump to 0.7 fixing bug#412771 and bug#431134. (diff)
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sci-biology/allpathslg: Drop old
(Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-biology/allpathslg')
-rw-r--r--sci-biology/allpathslg/ChangeLog8
-rw-r--r--sci-biology/allpathslg/allpathslg-41839.ebuild35
-rw-r--r--sci-biology/allpathslg/metadata.xml10
3 files changed, 11 insertions, 42 deletions
diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog
index 58636d308f52..1930bda93bd1 100644
--- a/sci-biology/allpathslg/ChangeLog
+++ b/sci-biology/allpathslg/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/allpathslg
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.10 2012/12/14 09:57:17 ulm Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.11 2013/02/18 12:32:22 jlec Exp $
+
+ 18 Feb 2013; Justin Lecher <jlec@gentoo.org> -allpathslg-41839.ebuild,
+ metadata.xml:
+ Drop old
14 Dec 2012; Ulrich Müller <ulm@gentoo.org> allpathslg-37578.ebuild,
allpathslg-41839.ebuild, allpathslg-42337.ebuild:
diff --git a/sci-biology/allpathslg/allpathslg-41839.ebuild b/sci-biology/allpathslg/allpathslg-41839.ebuild
deleted file mode 100644
index ff66b9feaf5e..000000000000
--- a/sci-biology/allpathslg/allpathslg-41839.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-41839.ebuild,v 1.3 2012/12/14 09:57:17 ulm Exp $
-
-EAPI=4
-
-inherit autotools flag-o-matic
-
-DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
-HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
-SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
-
-DEPEND="
- dev-libs/boost
- !sci-biology/allpaths
- sci-biology/vaal"
-RDEPEND=""
-
-src_prepare() {
- sed -i 's/-ggdb3//' configure.ac || die
- eautoreconf
-}
-
-src_install() {
- einstall || die
- # Provided by sci-biology/vaal
- for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
- rm "${D}/usr/bin/$i" || die
- done
-}
diff --git a/sci-biology/allpathslg/metadata.xml b/sci-biology/allpathslg/metadata.xml
index 3302123e5718..fc7c76942a10 100644
--- a/sci-biology/allpathslg/metadata.xml
+++ b/sci-biology/allpathslg/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>weaver@gentoo.org</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
</pkgmetadata>