{'description': {'en': 'Gentoo overlay of R packages'}, 'homepage': 'https://cgit.gentoo.org/proj/R_overlay.git/', 'name': 'R_Overlay', 'owner': [{'email': 'heroxbd@gentoo.org', 'name': 'Benda Xu', 'type': 'person'}], 'quality': 'experimental', 'source': [{'type': 'rsync', 'uri': 'rsync://roverlay.dev.gentoo.org/roverlay'}], 'status': 'official'} $ pmaint sync R_Overlay WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/sync/genthree' has unsupported profile format: profile-bashrcs WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/sync/xelnor' has unsupported profile format: build-id WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/sync/xelnor' has unsupported profile format: build-id *** syncing R_Overlay receiving incremental file list eclass/R-packages.eclass metadata/layout.conf metadata/md5-cache/ metadata/md5-cache/sci-BIOC/ metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0 metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0 metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0 metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9 metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7 metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7 metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7 metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7 metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10 metadata/md5-cache/sci-BIOC/pd_ath1_121501-3.12.0 metadata/md5-cache/sci-BIOC/pd_canine_2-3.12.0 metadata/md5-cache/sci-BIOC/pd_drosophila_2-3.12.0 metadata/md5-cache/sci-BIOC/pd_e_coli_2-3.12.0 metadata/md5-cache/sci-BIOC/pd_genomewidesnp_5-3.14.1 metadata/md5-cache/sci-BIOC/pd_genomewidesnp_6-3.14.1 metadata/md5-cache/sci-BIOC/pd_hg_u133_plus_2-3.12.0 metadata/md5-cache/sci-BIOC/pd_hg_u133a_2-3.12.0 metadata/md5-cache/sci-BIOC/pd_hta_2_0-3.12.1 metadata/md5-cache/sci-BIOC/pd_mirna_1_0-3.12.0 metadata/md5-cache/sci-BIOC/pd_mirna_2_0-3.12.0 metadata/md5-cache/sci-BIOC/pd_mirna_3_0-3.12.0 metadata/md5-cache/sci-BIOC/pd_mirna_3_1-3.8.1 metadata/md5-cache/sci-BIOC/pd_mirna_4_0-3.12.0 metadata/md5-cache/sci-BIOC/pd_mouse430_2-3.12.0 metadata/md5-cache/sci-BIOC/pd_mouse430a_2-3.12.0 metadata/md5-cache/sci-BIOC/pd_mta_1_0-3.12.0 metadata/md5-cache/sci-BIOC/pd_rat230_2-3.12.0 metadata/md5-cache/sci-BIOC/pd_rta_1_0-3.12.0 metadata/md5-cache/sci-BIOC/pd_x_laevis_2-3.12.0 metadata/md5-cache/sci-BIOC/pd_yeast_2-3.12.0 metadata/md5-cache/sci-CRAN/ metadata/md5-cache/sci-CRAN/CoRpower-1.0.0 metadata/md5-cache/sci-CRAN/CutpointsOEHR-0.1.1 metadata/md5-cache/sci-CRAN/DRIP-1.4 metadata/md5-cache/sci-CRAN/Opt5PL-0.1.1 metadata/md5-cache/sci-CRAN/PredictionR-1.0.11 metadata/md5-cache/sci-CRAN/QDComparison-1.0 metadata/md5-cache/sci-CRAN/SSDforR-1.4.21 metadata/md5-cache/sci-CRAN/VICmodel-0.1.1 metadata/md5-cache/sci-CRAN/airportr-0.1.2 metadata/md5-cache/sci-CRAN/bazar-1.0.10 metadata/md5-cache/sci-CRAN/coalitions-0.6.5 metadata/md5-cache/sci-CRAN/cvar-0.3.0 metadata/md5-cache/sci-CRAN/eixport-0.3.6 metadata/md5-cache/sci-CRAN/gamlss-5.1.2 metadata/md5-cache/sci-CRAN/gamlss_data-5.1.0 metadata/md5-cache/sci-CRAN/gamlss_dist-5.1.0 metadata/md5-cache/sci-CRAN/googledrive-0.1.2 metadata/md5-cache/sci-CRAN/ijtiff-1.4.2 metadata/md5-cache/sci-CRAN/lamme-0.0.1 metadata/md5-cache/sci-CRAN/listviewer-2.1.0 metadata/md5-cache/sci-CRAN/mcbiopi-1.1.6 metadata/md5-cache/sci-CRAN/metamedian-0.1.0 metadata/md5-cache/sci-CRAN/motmot_2_0-1.1.2 metadata/md5-cache/sci-CRAN/outcomerate-1.0.1 metadata/md5-cache/sci-CRAN/pdSpecEst-1.2.3 metadata/md5-cache/sci-CRAN/piggyback-0.0.8 metadata/md5-cache/sci-CRAN/provenance-2.2 metadata/md5-cache/sci-CRAN/radiant_basics-0.9.7 metadata/md5-cache/sci-CRAN/radiant_design-0.9.7 metadata/md5-cache/sci-CRAN/radiant_model-0.9.7 metadata/md5-cache/sci-CRAN/radiant_multivariate-0.9.7 metadata/md5-cache/sci-CRAN/sdPrior-1.0.0 metadata/md5-cache/sci-CRAN/spmoran-0.1.6 metadata/md5-cache/sci-CRAN/stacomirtools-0.5.3 metadata/md5-cache/sci-CRAN/tls-0.1.0 metadata/md5-cache/sci-CRAN/treemapify-2.5.1 metadata/md5-cache/sci-CRAN/umx-2.8.5 profiles/categories profiles/repo_name profiles/use.desc sci-BIOC/BSgenome_Athaliana_TAIR_04232008/BSgenome_Athaliana_TAIR_04232008-1.3.1000.ebuild sci-BIOC/BSgenome_Athaliana_TAIR_04232008/Manifest sci-BIOC/BSgenome_Athaliana_TAIR_04232008/metadata.xml sci-BIOC/BSgenome_Ecoli_NCBI_20080805/BSgenome_Ecoli_NCBI_20080805-1.3.1000.ebuild sci-BIOC/BSgenome_Ecoli_NCBI_20080805/Manifest sci-BIOC/BSgenome_Ecoli_NCBI_20080805/metadata.xml sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/BSgenome_Mfascicularis_NCBI_5_0-1.4.2.ebuild sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/Manifest sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/metadata.xml sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/BSgenome_Tgondii_ToxoDB_7_0-0.99.0.ebuild sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/Manifest sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/metadata.xml sci-BIOC/COSMIC_67/COSMIC_67-1.6.0.ebuild sci-BIOC/COSMIC_67/Manifest sci-BIOC/COSMIC_67/metadata.xml sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0.ebuild sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/Manifest sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/metadata.xml sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0.ebuild sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/Manifest sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/metadata.xml sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0.ebuild sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/Manifest sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/metadata.xml sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/Manifest sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9.ebuild sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/metadata.xml sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/Manifest sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7.ebuild sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/metadata.xml sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/Manifest sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7.ebuild sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/metadata.xml sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/Manifest sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7.ebuild sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/metadata.xml sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/Manifest sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7.ebuild sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/metadata.xml sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/Manifest sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10.ebuild sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/metadata.xml sci-BIOC/pd_ath1_121501/Manifest sci-BIOC/pd_ath1_121501/metadata.xml sci-BIOC/pd_ath1_121501/pd_ath1_121501-3.12.0.ebuild sci-BIOC/pd_canine_2/Manifest sci-BIOC/pd_canine_2/metadata.xml sci-BIOC/pd_canine_2/pd_canine_2-3.12.0.ebuild sci-BIOC/pd_drosophila_2/Manifest sci-BIOC/pd_drosophila_2/metadata.xml sci-BIOC/pd_drosophila_2/pd_drosophila_2-3.12.0.ebuild sci-BIOC/pd_e_coli_2/Manifest sci-BIOC/pd_e_coli_2/metadata.xml sci-BIOC/pd_e_coli_2/pd_e_coli_2-3.12.0.ebuild sci-BIOC/pd_genomewidesnp_5/Manifest sci-BIOC/pd_genomewidesnp_5/metadata.xml sci-BIOC/pd_genomewidesnp_5/pd_genomewidesnp_5-3.14.1.ebuild sci-BIOC/pd_genomewidesnp_6/Manifest sci-BIOC/pd_genomewidesnp_6/metadata.xml sci-BIOC/pd_genomewidesnp_6/pd_genomewidesnp_6-3.14.1.ebuild sci-BIOC/pd_hg_u133_plus_2/Manifest sci-BIOC/pd_hg_u133_plus_2/metadata.xml sci-BIOC/pd_hg_u133_plus_2/pd_hg_u133_plus_2-3.12.0.ebuild sci-BIOC/pd_hg_u133a_2/Manifest sci-BIOC/pd_hg_u133a_2/metadata.xml sci-BIOC/pd_hg_u133a_2/pd_hg_u133a_2-3.12.0.ebuild sci-BIOC/pd_hta_2_0/Manifest sci-BIOC/pd_hta_2_0/metadata.xml sci-BIOC/pd_hta_2_0/pd_hta_2_0-3.12.1.ebuild sci-BIOC/pd_mirna_1_0/Manifest sci-BIOC/pd_mirna_1_0/metadata.xml sci-BIOC/pd_mirna_1_0/pd_mirna_1_0-3.12.0.ebuild sci-BIOC/pd_mirna_2_0/Manifest sci-BIOC/pd_mirna_2_0/metadata.xml sci-BIOC/pd_mirna_2_0/pd_mirna_2_0-3.12.0.ebuild sci-BIOC/pd_mirna_3_0/Manifest sci-BIOC/pd_mirna_3_0/metadata.xml sci-BIOC/pd_mirna_3_0/pd_mirna_3_0-3.12.0.ebuild sci-BIOC/pd_mirna_3_1/Manifest sci-BIOC/pd_mirna_3_1/metadata.xml sci-BIOC/pd_mirna_3_1/pd_mirna_3_1-3.8.1.ebuild sci-BIOC/pd_mirna_4_0/Manifest sci-BIOC/pd_mirna_4_0/metadata.xml sci-BIOC/pd_mirna_4_0/pd_mirna_4_0-3.12.0.ebuild sci-BIOC/pd_mouse430_2/Manifest sci-BIOC/pd_mouse430_2/metadata.xml sci-BIOC/pd_mouse430_2/pd_mouse430_2-3.12.0.ebuild sci-BIOC/pd_mouse430a_2/Manifest sci-BIOC/pd_mouse430a_2/metadata.xml sci-BIOC/pd_mouse430a_2/pd_mouse430a_2-3.12.0.ebuild sci-BIOC/pd_mta_1_0/Manifest sci-BIOC/pd_mta_1_0/metadata.xml sci-BIOC/pd_mta_1_0/pd_mta_1_0-3.12.0.ebuild sci-BIOC/pd_rat230_2/Manifest sci-BIOC/pd_rat230_2/metadata.xml sci-BIOC/pd_rat230_2/pd_rat230_2-3.12.0.ebuild sci-BIOC/pd_rta_1_0/Manifest sci-BIOC/pd_rta_1_0/metadata.xml sci-BIOC/pd_rta_1_0/pd_rta_1_0-3.12.0.ebuild sci-BIOC/pd_x_laevis_2/Manifest sci-BIOC/pd_x_laevis_2/metadata.xml sci-BIOC/pd_x_laevis_2/pd_x_laevis_2-3.12.0.ebuild sci-BIOC/pd_yeast_2/Manifest sci-BIOC/pd_yeast_2/metadata.xml sci-BIOC/pd_yeast_2/pd_yeast_2-3.12.0.ebuild sci-CRAN/ sci-CRAN/CoRpower/ sci-CRAN/CoRpower/CoRpower-1.0.0.ebuild sci-CRAN/CoRpower/Manifest sci-CRAN/CoRpower/metadata.xml sci-CRAN/CutpointsOEHR/ sci-CRAN/CutpointsOEHR/CutpointsOEHR-0.1.1.ebuild sci-CRAN/CutpointsOEHR/Manifest sci-CRAN/CutpointsOEHR/metadata.xml sci-CRAN/DRIP/ sci-CRAN/DRIP/DRIP-1.4.ebuild sci-CRAN/DRIP/Manifest sci-CRAN/DRIP/metadata.xml sci-CRAN/FuzzyNumbers_Ext_2/FuzzyNumbers_Ext_2-3.2.ebuild sci-CRAN/FuzzyNumbers_Ext_2/Manifest sci-CRAN/FuzzyNumbers_Ext_2/metadata.xml sci-CRAN/Opt5PL/ sci-CRAN/Opt5PL/Manifest sci-CRAN/Opt5PL/Opt5PL-0.1.1.ebuild sci-CRAN/Opt5PL/metadata.xml sci-CRAN/PredictionR/ sci-CRAN/PredictionR/Manifest sci-CRAN/PredictionR/PredictionR-1.0.11.ebuild sci-CRAN/PredictionR/metadata.xml sci-CRAN/QDComparison/ sci-CRAN/QDComparison/Manifest sci-CRAN/QDComparison/QDComparison-1.0.ebuild sci-CRAN/QDComparison/metadata.xml sci-CRAN/SSDforR/ sci-CRAN/SSDforR/Manifest sci-CRAN/SSDforR/SSDforR-1.4.21.ebuild sci-CRAN/SSDforR/metadata.xml sci-CRAN/VICmodel/ sci-CRAN/VICmodel/Manifest sci-CRAN/VICmodel/VICmodel-0.1.1.ebuild sci-CRAN/VICmodel/metadata.xml sci-CRAN/airportr/ sci-CRAN/airportr/Manifest sci-CRAN/airportr/airportr-0.1.2.ebuild sci-CRAN/airportr/metadata.xml sci-CRAN/bazar/ sci-CRAN/bazar/Manifest sci-CRAN/bazar/bazar-1.0.10.ebuild sci-CRAN/bazar/metadata.xml sci-CRAN/coalitions/ sci-CRAN/coalitions/Manifest sci-CRAN/coalitions/coalitions-0.6.5.ebuild sci-CRAN/coalitions/metadata.xml sci-CRAN/cvar/ sci-CRAN/cvar/Manifest sci-CRAN/cvar/cvar-0.3.0.ebuild sci-CRAN/cvar/metadata.xml sci-CRAN/eixport/ sci-CRAN/eixport/Manifest sci-CRAN/eixport/eixport-0.3.6.ebuild sci-CRAN/eixport/metadata.xml sci-CRAN/gamlss/ sci-CRAN/gamlss/Manifest sci-CRAN/gamlss/gamlss-5.1.2.ebuild sci-CRAN/gamlss/metadata.xml sci-CRAN/gamlss_data/ sci-CRAN/gamlss_data/Manifest sci-CRAN/gamlss_data/gamlss_data-5.1.0.ebuild sci-CRAN/gamlss_data/metadata.xml sci-CRAN/gamlss_dist/ sci-CRAN/gamlss_dist/Manifest sci-CRAN/gamlss_dist/gamlss_dist-5.1.0.ebuild sci-CRAN/gamlss_dist/metadata.xml sci-CRAN/googledrive/ sci-CRAN/googledrive/Manifest sci-CRAN/googledrive/googledrive-0.1.2.ebuild sci-CRAN/googledrive/metadata.xml sci-CRAN/ijtiff/ sci-CRAN/ijtiff/Manifest sci-CRAN/ijtiff/ijtiff-1.4.2.ebuild sci-CRAN/ijtiff/metadata.xml sci-CRAN/lamme/ sci-CRAN/lamme/Manifest sci-CRAN/lamme/lamme-0.0.1.ebuild sci-CRAN/lamme/metadata.xml sci-CRAN/listviewer/ sci-CRAN/listviewer/Manifest sci-CRAN/listviewer/listviewer-2.1.0.ebuild sci-CRAN/listviewer/metadata.xml sci-CRAN/mcbiopi/ sci-CRAN/mcbiopi/Manifest sci-CRAN/mcbiopi/mcbiopi-1.1.6.ebuild sci-CRAN/mcbiopi/metadata.xml sci-CRAN/metamedian/ sci-CRAN/metamedian/Manifest sci-CRAN/metamedian/metadata.xml sci-CRAN/metamedian/metamedian-0.1.0.ebuild sci-CRAN/motmot_2_0/Manifest sci-CRAN/motmot_2_0/metadata.xml sci-CRAN/motmot_2_0/motmot_2_0-1.1.2.ebuild sci-CRAN/outcomerate/ sci-CRAN/outcomerate/Manifest sci-CRAN/outcomerate/metadata.xml sci-CRAN/outcomerate/outcomerate-1.0.1.ebuild sci-CRAN/pdSpecEst/ sci-CRAN/pdSpecEst/Manifest sci-CRAN/pdSpecEst/metadata.xml sci-CRAN/pdSpecEst/pdSpecEst-1.2.3.ebuild sci-CRAN/piggyback/ sci-CRAN/piggyback/Manifest sci-CRAN/piggyback/metadata.xml sci-CRAN/piggyback/piggyback-0.0.8.ebuild sci-CRAN/provenance/ sci-CRAN/provenance/Manifest sci-CRAN/provenance/metadata.xml sci-CRAN/provenance/provenance-2.2.ebuild sci-CRAN/radiant_basics/ sci-CRAN/radiant_basics/Manifest sci-CRAN/radiant_basics/metadata.xml sci-CRAN/radiant_basics/radiant_basics-0.9.7.ebuild sci-CRAN/radiant_design/ sci-CRAN/radiant_design/Manifest sci-CRAN/radiant_design/metadata.xml sci-CRAN/radiant_design/radiant_design-0.9.7.ebuild sci-CRAN/radiant_model/ sci-CRAN/radiant_model/Manifest sci-CRAN/radiant_model/metadata.xml sci-CRAN/radiant_model/radiant_model-0.9.7.ebuild sci-CRAN/radiant_multivariate/ sci-CRAN/radiant_multivariate/Manifest sci-CRAN/radiant_multivariate/metadata.xml sci-CRAN/radiant_multivariate/radiant_multivariate-0.9.7.ebuild sci-CRAN/sdPrior/ sci-CRAN/sdPrior/Manifest sci-CRAN/sdPrior/metadata.xml sci-CRAN/sdPrior/sdPrior-1.0.0.ebuild sci-CRAN/spmoran/ sci-CRAN/spmoran/Manifest sci-CRAN/spmoran/metadata.xml sci-CRAN/spmoran/spmoran-0.1.6.ebuild sci-CRAN/stacomirtools/ sci-CRAN/stacomirtools/Manifest sci-CRAN/stacomirtools/metadata.xml sci-CRAN/stacomirtools/stacomirtools-0.5.3.ebuild sci-CRAN/tls/ sci-CRAN/tls/Manifest sci-CRAN/tls/metadata.xml sci-CRAN/tls/tls-0.1.0.ebuild sci-CRAN/treemapify/ sci-CRAN/treemapify/Manifest sci-CRAN/treemapify/metadata.xml sci-CRAN/treemapify/treemapify-2.5.1.ebuild sci-CRAN/umx/ sci-CRAN/umx/Manifest sci-CRAN/umx/metadata.xml sci-CRAN/umx/umx-2.8.5.ebuild Number of files: 148,620 (reg: 132,418, dir: 16,202) Number of created files: 96 (reg: 88, dir: 8) Number of deleted files: 0 Number of regular files transferred: 291 Total file size: 131.02M bytes Total transferred file size: 346.06K bytes Literal data: 346.06K bytes Matched data: 0 bytes File list size: 3.95M File list generation time: 0.001 seconds File list transfer time: 0.000 seconds Total bytes sent: 22.83K Total bytes received: 4.55M sent 22.83K bytes received 4.55M bytes 1.31M bytes/sec total size is 131.02M speedup is 28.64 *** synced R_Overlay * Sync succeeded $ stat --format=%y . $ pmaint regen --use-local-desc --pkg-desc-index -t 1 R_Overlay WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/repos/genthree' has unsupported profile format: profile-bashrcs WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/repos/xelnor' has unsupported profile format: build-id WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/repos/xelnor' has unsupported profile format: build-id WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/repos/genthree' has unsupported profile format: profile-bashrcs WARNING:pkgcore:EAPI 7 isn't fully supported * Cache regenerated successfully