From 56bd759df1d0c750a065b8c845e93d5dfa6b549d Mon Sep 17 00:00:00 2001 From: "Robin H. Johnson" Date: Sat, 8 Aug 2015 13:49:04 -0700 Subject: proj/gentoo: Initial commit MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson X-Thanks: Alec Warner - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring - wrote much python to improve cvs2svn X-Thanks: Rich Freeman - validation scripts X-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed --- sci-visualization/circos/Manifest | 1 + sci-visualization/circos/circos-0.55.ebuild | 36 +++++++++++++++++++++++++++++ sci-visualization/circos/metadata.xml | 13 +++++++++++ 3 files changed, 50 insertions(+) create mode 100644 sci-visualization/circos/Manifest create mode 100644 sci-visualization/circos/circos-0.55.ebuild create mode 100644 sci-visualization/circos/metadata.xml (limited to 'sci-visualization/circos') diff --git a/sci-visualization/circos/Manifest b/sci-visualization/circos/Manifest new file mode 100644 index 000000000000..a749ed41ec85 --- /dev/null +++ b/sci-visualization/circos/Manifest @@ -0,0 +1 @@ +DIST circos-0.55.tgz 10163948 SHA256 3c9f3302b7becb8300d31153d9f8db5552491cb21f5b4cb2f3dc4ca9fd2a362d SHA512 3ebad082acd96b27281e6fcd996fb79022d982a93db59e1f3589a341df7f9855d7554fb92c88c41dc4679e7273d11c0372285a4059ec14a77f11d1d4014db9c1 WHIRLPOOL 4c242fbea59095f24d08eb18c9c9e145e6c7b783581297698a8b21d702019d621709a233bf4ba06928f00ced4eb9e50674f338d12265eaf948533a7ef0a2e251 diff --git a/sci-visualization/circos/circos-0.55.ebuild b/sci-visualization/circos/circos-0.55.ebuild new file mode 100644 index 000000000000..8d443f8d5542 --- /dev/null +++ b/sci-visualization/circos/circos-0.55.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +DESCRIPTION="Circular layout visualization of genomic and other data" +HOMEPAGE="http://mkweb.bcgsc.ca/circos/" +SRC_URI="http://mkweb.bcgsc.ca/circos/distribution/${P}.tgz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +DEPEND="dev-perl/Config-General + dev-perl/GD + dev-perl/Math-Bezier + dev-perl/Math-Round + dev-perl/Math-VecStat + dev-perl/Params-Validate + dev-perl/Readonly + dev-perl/regexp-common + >=dev-perl/Set-IntSpan-1.11 + dev-perl/Graphics-ColorObject + dev-perl/List-MoreUtils" +RDEPEND="${DEPEND}" + +src_install() { + insinto /opt/${PN} + find * -maxdepth 0 -type d | xargs doins -r + exeinto /opt/${PN}/bin + doexe bin/circos bin/gddiag + dosym /opt/${PN}/bin/circos /usr/bin/circos + find * -maxdepth 0 -type f | xargs dodoc +} diff --git a/sci-visualization/circos/metadata.xml b/sci-visualization/circos/metadata.xml new file mode 100644 index 000000000000..97aca918f628 --- /dev/null +++ b/sci-visualization/circos/metadata.xml @@ -0,0 +1,13 @@ + + + +sci-biology + + Circos visualizes data in a circular layout — this makes Circos + ideal for exploring relationships between objects or + positions. Circos is ideal for creating publication-quality + infographics and illustrations with a high data-to-ink ratio, richly + layered data and pleasant symmetries. You have fine control each element + in the figure to tailor its focus points and detail to your audience. + + -- cgit v1.2.3-65-gdbad