From 6261a04eeaca6435105d0e32a1b0abcc64ac04b9 Mon Sep 17 00:00:00 2001 From: Michał Górny Date: Tue, 16 Mar 2021 21:28:00 +0100 Subject: dev-python/pandas: Remove the optional dep on dev-python/xlrd MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Signed-off-by: Michał Górny --- dev-python/pandas/pandas-1.1.5-r1.ebuild | 182 ----------------------------- dev-python/pandas/pandas-1.1.5-r2.ebuild | 180 +++++++++++++++++++++++++++++ dev-python/pandas/pandas-1.2.1-r2.ebuild | 191 ------------------------------- dev-python/pandas/pandas-1.2.1-r3.ebuild | 189 ++++++++++++++++++++++++++++++ dev-python/pandas/pandas-1.2.2-r1.ebuild | 190 ------------------------------ dev-python/pandas/pandas-1.2.2-r2.ebuild | 188 ++++++++++++++++++++++++++++++ dev-python/pandas/pandas-1.2.3-r2.ebuild | 191 ------------------------------- dev-python/pandas/pandas-1.2.3-r3.ebuild | 189 ++++++++++++++++++++++++++++++ 8 files changed, 746 insertions(+), 754 deletions(-) delete mode 100644 dev-python/pandas/pandas-1.1.5-r1.ebuild create mode 100644 dev-python/pandas/pandas-1.1.5-r2.ebuild delete mode 100644 dev-python/pandas/pandas-1.2.1-r2.ebuild create mode 100644 dev-python/pandas/pandas-1.2.1-r3.ebuild delete mode 100644 dev-python/pandas/pandas-1.2.2-r1.ebuild create mode 100644 dev-python/pandas/pandas-1.2.2-r2.ebuild delete mode 100644 dev-python/pandas/pandas-1.2.3-r2.ebuild create mode 100644 dev-python/pandas/pandas-1.2.3-r3.ebuild (limited to 'dev-python/pandas') diff --git a/dev-python/pandas/pandas-1.1.5-r1.ebuild b/dev-python/pandas/pandas-1.1.5-r1.ebuild deleted file mode 100644 index 75aeaa4bcee4..000000000000 --- a/dev-python/pandas/pandas-1.1.5-r1.ebuild +++ /dev/null @@ -1,182 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..9} ) -PYTHON_REQ_USE="threads(+)" - -VIRTUALX_REQUIRED="manual" - -inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx - -DESCRIPTION="Powerful data structures for data analysis and statistics" -HOMEPAGE="https://pandas.pydata.org/" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz" -S="${WORKDIR}/${P/_/}" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="amd64 ~arm ~arm64 x86" -IUSE="doc full-support minimal test X" -RESTRICT="!test? ( test )" - -RECOMMENDED_DEPEND=" - >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}] - >=dev-python/numexpr-2.1[${PYTHON_USEDEP}] -" - -# TODO: add pandas-gbq to the tree -OPTIONAL_DEPEND=" - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/blosc[${PYTHON_USEDEP}] - || ( - dev-python/html5lib[${PYTHON_USEDEP}] - dev-python/lxml[${PYTHON_USEDEP}] - ) - dev-python/jinja[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - || ( - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/xlsxwriter[${PYTHON_USEDEP}] - ) - >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}] - dev-python/statsmodels[${PYTHON_USEDEP}] - $(python_gen_cond_dep ' - >=dev-python/xarray-0.10.8[${PYTHON_USEDEP}] - ' python3_{6,7}) - >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}] - >=dev-python/xlrd-1.0.0[${PYTHON_USEDEP}] - dev-python/xlwt[${PYTHON_USEDEP}] - >=dev-python/scipy-1.1[${PYTHON_USEDEP}] - X? ( - || ( - dev-python/PyQt5[${PYTHON_USEDEP}] - x11-misc/xclip - x11-misc/xsel - ) - ) -" -COMMON_DEPEND=" - >dev-python/numpy-1.15.4[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - dev-python/pytz[${PYTHON_USEDEP}] -" -DEPEND="${COMMON_DEPEND} - >=dev-python/cython-0.29.21[${PYTHON_USEDEP}] - doc? ( - ${VIRTUALX_DEPEND} - app-text/pandoc - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/html5lib[${PYTHON_USEDEP}] - dev-python/ipython[${PYTHON_USEDEP}] - dev-python/lxml[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/nbsphinx[${PYTHON_USEDEP}] - >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] - >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] - >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}] - dev-python/pytz[${PYTHON_USEDEP}] - dev-python/rpy[${PYTHON_USEDEP}] - dev-python/sphinx[${PYTHON_USEDEP}] - dev-python/xlrd[${PYTHON_USEDEP}] - dev-python/xlwt[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - x11-misc/xclip - ) - test? ( - ${VIRTUALX_DEPEND} - ${RECOMMENDED_DEPEND} - ${OPTIONAL_DEPEND} - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/hypothesis[${PYTHON_USEDEP}] - dev-python/nose[${PYTHON_USEDEP}] - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/pymysql[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pytest-mock[${PYTHON_USEDEP}] - dev-python/pytest-xdist[${PYTHON_USEDEP}] - dev-python/psycopg:2[${PYTHON_USEDEP}] - dev-python/xlsxwriter[${PYTHON_USEDEP}] - x11-misc/xclip - x11-misc/xsel - ) -" -# dev-python/statsmodels invokes a circular dep -# hence rm from doc? ( ), again -RDEPEND="${COMMON_DEPEND} - !minimal? ( ${RECOMMENDED_DEPEND} ) - full-support? ( ${OPTIONAL_DEPEND} ) -" - -python_prepare_all() { - # Prevent un-needed download during build - sed -e "/^ 'sphinx.ext.intersphinx',/d" \ - -i doc/source/conf.py || die - - # requires package installed - sed -e 's:test_register_entrypoint:_&:' \ - -i pandas/tests/plotting/test_backend.py || die - - sed -e '/extra_compile_args =/s:"-Werror"::' \ - -i setup.py || die - - distutils-r1_python_prepare_all -} - -python_compile() { - distutils-r1_python_compile -j1 -} - -python_compile_all() { - # To build docs the need be located in $BUILD_DIR, - # else PYTHONPATH points to unusable modules. - if use doc; then - cd "${BUILD_DIR}"/lib || die - cp -ar "${S}"/doc . && cd doc || die - LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html - fi -} - -src_test() { - virtx distutils-r1_src_test -} - -python_test() { - local -x LC_ALL=C.UTF-8 - pushd "${BUILD_DIR}"/lib > /dev/null || die - "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die - PYTHONPATH=. pytest pandas -v --skip-slow --skip-network \ - -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" \ - -m "not single" || die "Tests failed with ${EPYTHON}" - find . '(' -name .pytest_cache -o -name .hypothesis ')' \ - -exec rm -r {} + || die - popd > /dev/null || die -} - -python_install_all() { - if use doc; then - dodoc -r "${BUILD_DIR}"/lib/doc/build/html - einfo "An initial build of docs is absent of references to statsmodels" - einfo "due to circular dependency. To have them included, emerge" - einfo "statsmodels next and re-emerge pandas with USE doc" - fi - - distutils-r1_python_install_all -} - -pkg_postinst() { - optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck - optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" - optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml - optfeature "for msgpack compression using blosc" dev-python/blosc - optfeature "Template engine for conditional HTML formatting" dev-python/jinja - optfeature "Plotting support" dev-python/matplotlib - optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt - optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1" - optfeature "R I/O support" dev-python/rpy - optfeature "Needed for parts of pandas.stats" dev-python/statsmodels - optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1" - optfeature "miscellaneous statistical functions" dev-python/scipy - optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel -} diff --git a/dev-python/pandas/pandas-1.1.5-r2.ebuild b/dev-python/pandas/pandas-1.1.5-r2.ebuild new file mode 100644 index 000000000000..feb1512bc21e --- /dev/null +++ b/dev-python/pandas/pandas-1.1.5-r2.ebuild @@ -0,0 +1,180 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_REQ_USE="threads(+)" + +VIRTUALX_REQUIRED="manual" + +inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx + +DESCRIPTION="Powerful data structures for data analysis and statistics" +HOMEPAGE="https://pandas.pydata.org/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz" +S="${WORKDIR}/${P/_/}" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="amd64 ~arm ~arm64 x86" +IUSE="doc full-support minimal test X" +RESTRICT="!test? ( test )" + +RECOMMENDED_DEPEND=" + >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}] + >=dev-python/numexpr-2.1[${PYTHON_USEDEP}] +" + +# TODO: add pandas-gbq to the tree +OPTIONAL_DEPEND=" + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/blosc[${PYTHON_USEDEP}] + || ( + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + ) + dev-python/jinja[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + || ( + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + ) + >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}] + dev-python/statsmodels[${PYTHON_USEDEP}] + $(python_gen_cond_dep ' + >=dev-python/xarray-0.10.8[${PYTHON_USEDEP}] + ' python3_{6,7}) + >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + >=dev-python/scipy-1.1[${PYTHON_USEDEP}] + X? ( + || ( + dev-python/PyQt5[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) + ) +" +COMMON_DEPEND=" + >dev-python/numpy-1.15.4[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] +" +DEPEND="${COMMON_DEPEND} + >=dev-python/cython-0.29.21[${PYTHON_USEDEP}] + doc? ( + ${VIRTUALX_DEPEND} + app-text/pandoc + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/ipython[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/nbsphinx[${PYTHON_USEDEP}] + >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] + >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] + >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] + dev-python/rpy[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + x11-misc/xclip + ) + test? ( + ${VIRTUALX_DEPEND} + ${RECOMMENDED_DEPEND} + ${OPTIONAL_DEPEND} + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/hypothesis[${PYTHON_USEDEP}] + dev-python/nose[${PYTHON_USEDEP}] + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/pymysql[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + dev-python/pytest-mock[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] + dev-python/psycopg:2[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) +" +# dev-python/statsmodels invokes a circular dep +# hence rm from doc? ( ), again +RDEPEND="${COMMON_DEPEND} + !minimal? ( ${RECOMMENDED_DEPEND} ) + full-support? ( ${OPTIONAL_DEPEND} ) +" + +python_prepare_all() { + # Prevent un-needed download during build + sed -e "/^ 'sphinx.ext.intersphinx',/d" \ + -i doc/source/conf.py || die + + # requires package installed + sed -e 's:test_register_entrypoint:_&:' \ + -i pandas/tests/plotting/test_backend.py || die + + sed -e '/extra_compile_args =/s:"-Werror"::' \ + -i setup.py || die + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile -j1 +} + +python_compile_all() { + # To build docs the need be located in $BUILD_DIR, + # else PYTHONPATH points to unusable modules. + if use doc; then + cd "${BUILD_DIR}"/lib || die + cp -ar "${S}"/doc . && cd doc || die + LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html + fi +} + +src_test() { + virtx distutils-r1_src_test +} + +python_test() { + local -x LC_ALL=C.UTF-8 + pushd "${BUILD_DIR}"/lib > /dev/null || die + "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die + PYTHONPATH=. pytest pandas -v --skip-slow --skip-network \ + -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" \ + -m "not single" || die "Tests failed with ${EPYTHON}" + find . '(' -name .pytest_cache -o -name .hypothesis ')' \ + -exec rm -r {} + || die + popd > /dev/null || die +} + +python_install_all() { + if use doc; then + dodoc -r "${BUILD_DIR}"/lib/doc/build/html + einfo "An initial build of docs is absent of references to statsmodels" + einfo "due to circular dependency. To have them included, emerge" + einfo "statsmodels next and re-emerge pandas with USE doc" + fi + + distutils-r1_python_install_all +} + +pkg_postinst() { + optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck + optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" + optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml + optfeature "for msgpack compression using blosc" dev-python/blosc + optfeature "Template engine for conditional HTML formatting" dev-python/jinja + optfeature "Plotting support" dev-python/matplotlib + optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlwt + optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1" + optfeature "R I/O support" dev-python/rpy + optfeature "Needed for parts of pandas.stats" dev-python/statsmodels + optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1" + optfeature "miscellaneous statistical functions" dev-python/scipy + optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel +} diff --git a/dev-python/pandas/pandas-1.2.1-r2.ebuild b/dev-python/pandas/pandas-1.2.1-r2.ebuild deleted file mode 100644 index 67cd25aff9d1..000000000000 --- a/dev-python/pandas/pandas-1.2.1-r2.ebuild +++ /dev/null @@ -1,191 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..9} ) -PYTHON_REQ_USE="threads(+)" - -VIRTUALX_REQUIRED="manual" - -inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx - -DESCRIPTION="Powerful data structures for data analysis and statistics" -HOMEPAGE="https://pandas.pydata.org/" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz" -S="${WORKDIR}/${P/_/}" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="amd64 ~arm ~arm64 ~x86" -IUSE="doc full-support minimal test X" -RESTRICT="!test? ( test )" - -RECOMMENDED_DEPEND=" - >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}] - >=dev-python/numexpr-2.1[${PYTHON_USEDEP}] -" - -# TODO: add pandas-gbq to the tree -OPTIONAL_DEPEND=" - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/blosc[${PYTHON_USEDEP}] - || ( - dev-python/html5lib[${PYTHON_USEDEP}] - dev-python/lxml[${PYTHON_USEDEP}] - ) - dev-python/jinja[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - || ( - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/xlsxwriter[${PYTHON_USEDEP}] - ) - >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}] - dev-python/statsmodels[${PYTHON_USEDEP}] - $(python_gen_cond_dep ' - >=dev-python/xarray-0.10.8[${PYTHON_USEDEP}] - ' python3_{6,7}) - >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}] - >=dev-python/xlrd-1.0.0[${PYTHON_USEDEP}] - dev-python/xlwt[${PYTHON_USEDEP}] - >=dev-python/scipy-1.1[${PYTHON_USEDEP}] - X? ( - || ( - dev-python/PyQt5[${PYTHON_USEDEP}] - x11-misc/xclip - x11-misc/xsel - ) - ) -" -COMMON_DEPEND=" - >dev-python/numpy-1.15.4[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - dev-python/pytz[${PYTHON_USEDEP}] -" -DEPEND="${COMMON_DEPEND} - >=dev-python/cython-0.29.21[${PYTHON_USEDEP}] - doc? ( - ${VIRTUALX_DEPEND} - app-text/pandoc - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/html5lib[${PYTHON_USEDEP}] - dev-python/ipython[${PYTHON_USEDEP}] - dev-python/lxml[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/nbsphinx[${PYTHON_USEDEP}] - >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] - >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] - >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}] - dev-python/pytz[${PYTHON_USEDEP}] - dev-python/rpy[${PYTHON_USEDEP}] - dev-python/sphinx[${PYTHON_USEDEP}] - dev-python/xlrd[${PYTHON_USEDEP}] - dev-python/xlwt[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - x11-misc/xclip - ) - test? ( - ${VIRTUALX_DEPEND} - ${RECOMMENDED_DEPEND} - ${OPTIONAL_DEPEND} - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/hypothesis[${PYTHON_USEDEP}] - dev-python/nose[${PYTHON_USEDEP}] - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/pymysql[${PYTHON_USEDEP}] - >=dev-python/pytest-5.1[${PYTHON_USEDEP}] - dev-python/pytest-mock[${PYTHON_USEDEP}] - dev-python/pytest-xdist[${PYTHON_USEDEP}] - dev-python/psycopg:2[${PYTHON_USEDEP}] - dev-python/xlsxwriter[${PYTHON_USEDEP}] - x11-misc/xclip - x11-misc/xsel - ) -" -# dev-python/statsmodels invokes a circular dep -# hence rm from doc? ( ), again -RDEPEND="${COMMON_DEPEND} - !minimal? ( ${RECOMMENDED_DEPEND} ) - full-support? ( ${OPTIONAL_DEPEND} ) -" - -python_prepare_all() { - # Prevent un-needed download during build - sed -e "/^ 'sphinx.ext.intersphinx',/d" \ - -i doc/source/conf.py || die - - # requires package installed - sed -e '/extra_compile_args =/s:"-Werror"::' \ - -i setup.py || die - - distutils-r1_python_prepare_all -} - -python_compile() { - if use amd64 || use x86; then - # FMA apparently breaks rolling var/stdev - # https://github.com/pandas-dev/pandas/issues/38921 - append-flags -mno-fma - fi - - distutils-r1_python_compile -j1 -} - -python_compile_all() { - # To build docs the need be located in $BUILD_DIR, - # else PYTHONPATH points to unusable modules. - if use doc; then - cd "${BUILD_DIR}"/lib || die - cp -ar "${S}"/doc . && cd doc || die - LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html - fi -} - -src_test() { - virtx distutils-r1_src_test -} - -python_test() { - local deselect=( - # weird issue, doesn't seem very important - 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]' - ) - - local -x LC_ALL=C.UTF-8 - pushd "${BUILD_DIR}"/lib > /dev/null || die - "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die - PYTHONPATH=. pytest pandas -vv --skip-slow --skip-network \ - ${deselect[@]/#/--deselect } \ - -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" \ - -m "not single" || die "Tests failed with ${EPYTHON}" - find . '(' -name .pytest_cache -o -name .hypothesis ')' \ - -exec rm -r {} + || die - popd > /dev/null || die -} - -python_install_all() { - if use doc; then - dodoc -r "${BUILD_DIR}"/lib/doc/build/html - einfo "An initial build of docs is absent of references to statsmodels" - einfo "due to circular dependency. To have them included, emerge" - einfo "statsmodels next and re-emerge pandas with USE doc" - fi - - distutils-r1_python_install_all -} - -pkg_postinst() { - optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck - optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" - optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml - optfeature "for msgpack compression using blosc" dev-python/blosc - optfeature "Template engine for conditional HTML formatting" dev-python/jinja - optfeature "Plotting support" dev-python/matplotlib - optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt - optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1" - optfeature "R I/O support" dev-python/rpy - optfeature "Needed for parts of pandas.stats" dev-python/statsmodels - optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1" - optfeature "miscellaneous statistical functions" dev-python/scipy - optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel -} diff --git a/dev-python/pandas/pandas-1.2.1-r3.ebuild b/dev-python/pandas/pandas-1.2.1-r3.ebuild new file mode 100644 index 000000000000..70d488714e20 --- /dev/null +++ b/dev-python/pandas/pandas-1.2.1-r3.ebuild @@ -0,0 +1,189 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_REQ_USE="threads(+)" + +VIRTUALX_REQUIRED="manual" + +inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx + +DESCRIPTION="Powerful data structures for data analysis and statistics" +HOMEPAGE="https://pandas.pydata.org/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz" +S="${WORKDIR}/${P/_/}" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="amd64 ~arm ~arm64 ~x86" +IUSE="doc full-support minimal test X" +RESTRICT="!test? ( test )" + +RECOMMENDED_DEPEND=" + >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}] + >=dev-python/numexpr-2.1[${PYTHON_USEDEP}] +" + +# TODO: add pandas-gbq to the tree +OPTIONAL_DEPEND=" + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/blosc[${PYTHON_USEDEP}] + || ( + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + ) + dev-python/jinja[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + || ( + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + ) + >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}] + dev-python/statsmodels[${PYTHON_USEDEP}] + $(python_gen_cond_dep ' + >=dev-python/xarray-0.10.8[${PYTHON_USEDEP}] + ' python3_{6,7}) + >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + >=dev-python/scipy-1.1[${PYTHON_USEDEP}] + X? ( + || ( + dev-python/PyQt5[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) + ) +" +COMMON_DEPEND=" + >dev-python/numpy-1.15.4[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] +" +DEPEND="${COMMON_DEPEND} + >=dev-python/cython-0.29.21[${PYTHON_USEDEP}] + doc? ( + ${VIRTUALX_DEPEND} + app-text/pandoc + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/ipython[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/nbsphinx[${PYTHON_USEDEP}] + >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] + >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] + >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] + dev-python/rpy[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + x11-misc/xclip + ) + test? ( + ${VIRTUALX_DEPEND} + ${RECOMMENDED_DEPEND} + ${OPTIONAL_DEPEND} + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/hypothesis[${PYTHON_USEDEP}] + dev-python/nose[${PYTHON_USEDEP}] + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/pymysql[${PYTHON_USEDEP}] + >=dev-python/pytest-5.1[${PYTHON_USEDEP}] + dev-python/pytest-mock[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] + dev-python/psycopg:2[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) +" +# dev-python/statsmodels invokes a circular dep +# hence rm from doc? ( ), again +RDEPEND="${COMMON_DEPEND} + !minimal? ( ${RECOMMENDED_DEPEND} ) + full-support? ( ${OPTIONAL_DEPEND} ) +" + +python_prepare_all() { + # Prevent un-needed download during build + sed -e "/^ 'sphinx.ext.intersphinx',/d" \ + -i doc/source/conf.py || die + + # requires package installed + sed -e '/extra_compile_args =/s:"-Werror"::' \ + -i setup.py || die + + distutils-r1_python_prepare_all +} + +python_compile() { + if use amd64 || use x86; then + # FMA apparently breaks rolling var/stdev + # https://github.com/pandas-dev/pandas/issues/38921 + append-flags -mno-fma + fi + + distutils-r1_python_compile -j1 +} + +python_compile_all() { + # To build docs the need be located in $BUILD_DIR, + # else PYTHONPATH points to unusable modules. + if use doc; then + cd "${BUILD_DIR}"/lib || die + cp -ar "${S}"/doc . && cd doc || die + LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html + fi +} + +src_test() { + virtx distutils-r1_src_test +} + +python_test() { + local deselect=( + # weird issue, doesn't seem very important + 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]' + ) + + local -x LC_ALL=C.UTF-8 + pushd "${BUILD_DIR}"/lib > /dev/null || die + "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die + PYTHONPATH=. pytest pandas -vv --skip-slow --skip-network \ + ${deselect[@]/#/--deselect } \ + -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" \ + -m "not single" || die "Tests failed with ${EPYTHON}" + find . '(' -name .pytest_cache -o -name .hypothesis ')' \ + -exec rm -r {} + || die + popd > /dev/null || die +} + +python_install_all() { + if use doc; then + dodoc -r "${BUILD_DIR}"/lib/doc/build/html + einfo "An initial build of docs is absent of references to statsmodels" + einfo "due to circular dependency. To have them included, emerge" + einfo "statsmodels next and re-emerge pandas with USE doc" + fi + + distutils-r1_python_install_all +} + +pkg_postinst() { + optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck + optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" + optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml + optfeature "for msgpack compression using blosc" dev-python/blosc + optfeature "Template engine for conditional HTML formatting" dev-python/jinja + optfeature "Plotting support" dev-python/matplotlib + optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlwt + optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1" + optfeature "R I/O support" dev-python/rpy + optfeature "Needed for parts of pandas.stats" dev-python/statsmodels + optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1" + optfeature "miscellaneous statistical functions" dev-python/scipy + optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel +} diff --git a/dev-python/pandas/pandas-1.2.2-r1.ebuild b/dev-python/pandas/pandas-1.2.2-r1.ebuild deleted file mode 100644 index a79b5b1c18ca..000000000000 --- a/dev-python/pandas/pandas-1.2.2-r1.ebuild +++ /dev/null @@ -1,190 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..9} ) -PYTHON_REQ_USE="threads(+)" - -VIRTUALX_REQUIRED="manual" - -inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx - -DESCRIPTION="Powerful data structures for data analysis and statistics" -HOMEPAGE="https://pandas.pydata.org/" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz" -S="${WORKDIR}/${P/_/}" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="~amd64 ~arm ~arm64 ~x86" -IUSE="doc full-support minimal test X" -RESTRICT="!test? ( test )" - -RECOMMENDED_DEPEND=" - >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}] - >=dev-python/numexpr-2.1[${PYTHON_USEDEP}] -" - -# TODO: add pandas-gbq to the tree -OPTIONAL_DEPEND=" - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/blosc[${PYTHON_USEDEP}] - || ( - dev-python/html5lib[${PYTHON_USEDEP}] - dev-python/lxml[${PYTHON_USEDEP}] - ) - dev-python/jinja[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - || ( - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/xlsxwriter[${PYTHON_USEDEP}] - ) - >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}] - dev-python/statsmodels[${PYTHON_USEDEP}] - $(python_gen_cond_dep ' - >=dev-python/xarray-0.10.8[${PYTHON_USEDEP}] - ' python3_{6,7}) - >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}] - >=dev-python/xlrd-1.0.0[${PYTHON_USEDEP}] - dev-python/xlwt[${PYTHON_USEDEP}] - >=dev-python/scipy-1.1[${PYTHON_USEDEP}] - X? ( - || ( - dev-python/PyQt5[${PYTHON_USEDEP}] - x11-misc/xclip - x11-misc/xsel - ) - ) -" -COMMON_DEPEND=" - >dev-python/numpy-1.15.4[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - dev-python/pytz[${PYTHON_USEDEP}] -" -DEPEND="${COMMON_DEPEND} - >=dev-python/cython-0.29.21[${PYTHON_USEDEP}] - doc? ( - ${VIRTUALX_DEPEND} - app-text/pandoc - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/html5lib[${PYTHON_USEDEP}] - dev-python/ipython[${PYTHON_USEDEP}] - dev-python/lxml[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/nbsphinx[${PYTHON_USEDEP}] - >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] - >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] - >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}] - dev-python/pytz[${PYTHON_USEDEP}] - dev-python/rpy[${PYTHON_USEDEP}] - dev-python/sphinx[${PYTHON_USEDEP}] - dev-python/xlrd[${PYTHON_USEDEP}] - dev-python/xlwt[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - x11-misc/xclip - ) - test? ( - ${VIRTUALX_DEPEND} - ${RECOMMENDED_DEPEND} - ${OPTIONAL_DEPEND} - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/hypothesis[${PYTHON_USEDEP}] - dev-python/nose[${PYTHON_USEDEP}] - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/pymysql[${PYTHON_USEDEP}] - >=dev-python/pytest-5.1[${PYTHON_USEDEP}] - dev-python/pytest-mock[${PYTHON_USEDEP}] - dev-python/pytest-xdist[${PYTHON_USEDEP}] - dev-python/psycopg:2[${PYTHON_USEDEP}] - dev-python/xlsxwriter[${PYTHON_USEDEP}] - x11-misc/xclip - x11-misc/xsel - ) -" -# dev-python/statsmodels invokes a circular dep -# hence rm from doc? ( ), again -RDEPEND="${COMMON_DEPEND} - !minimal? ( ${RECOMMENDED_DEPEND} ) - full-support? ( ${OPTIONAL_DEPEND} ) -" - -python_prepare_all() { - # Prevent un-needed download during build - sed -e "/^ 'sphinx.ext.intersphinx',/d" \ - -i doc/source/conf.py || die - - # requires package installed - sed -e '/extra_compile_args =/s:"-Werror"::' \ - -i setup.py || die - - distutils-r1_python_prepare_all -} - -python_compile() { - distutils-r1_python_compile -j1 -} - -python_compile_all() { - # To build docs the need be located in $BUILD_DIR, - # else PYTHONPATH points to unusable modules. - if use doc; then - cd "${BUILD_DIR}"/lib || die - cp -ar "${S}"/doc . && cd doc || die - LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html - fi -} - -src_test() { - virtx distutils-r1_src_test -} - -python_test() { - local deselect=( - # broken on practically any hardware/CFLAGS but the one - # the patch author was using - # https://github.com/pandas-dev/pandas/issues/38921 - pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues - - # weird issue, doesn't seem very important - 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]' - ) - - local -x LC_ALL=C.UTF-8 - pushd "${BUILD_DIR}"/lib > /dev/null || die - "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die - PYTHONPATH=. pytest pandas -vv --skip-slow --skip-network \ - ${deselect[@]/#/--deselect } \ - -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" \ - -m "not single" || die "Tests failed with ${EPYTHON}" - find . '(' -name .pytest_cache -o -name .hypothesis ')' \ - -exec rm -r {} + || die - popd > /dev/null || die -} - -python_install_all() { - if use doc; then - dodoc -r "${BUILD_DIR}"/lib/doc/build/html - einfo "An initial build of docs is absent of references to statsmodels" - einfo "due to circular dependency. To have them included, emerge" - einfo "statsmodels next and re-emerge pandas with USE doc" - fi - - distutils-r1_python_install_all -} - -pkg_postinst() { - optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck - optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" - optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml - optfeature "for msgpack compression using blosc" dev-python/blosc - optfeature "Template engine for conditional HTML formatting" dev-python/jinja - optfeature "Plotting support" dev-python/matplotlib - optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt - optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1" - optfeature "R I/O support" dev-python/rpy - optfeature "Needed for parts of pandas.stats" dev-python/statsmodels - optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1" - optfeature "miscellaneous statistical functions" dev-python/scipy - optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel -} diff --git a/dev-python/pandas/pandas-1.2.2-r2.ebuild b/dev-python/pandas/pandas-1.2.2-r2.ebuild new file mode 100644 index 000000000000..5f5244dbad07 --- /dev/null +++ b/dev-python/pandas/pandas-1.2.2-r2.ebuild @@ -0,0 +1,188 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_REQ_USE="threads(+)" + +VIRTUALX_REQUIRED="manual" + +inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx + +DESCRIPTION="Powerful data structures for data analysis and statistics" +HOMEPAGE="https://pandas.pydata.org/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz" +S="${WORKDIR}/${P/_/}" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="~amd64 ~arm ~arm64 ~x86" +IUSE="doc full-support minimal test X" +RESTRICT="!test? ( test )" + +RECOMMENDED_DEPEND=" + >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}] + >=dev-python/numexpr-2.1[${PYTHON_USEDEP}] +" + +# TODO: add pandas-gbq to the tree +OPTIONAL_DEPEND=" + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/blosc[${PYTHON_USEDEP}] + || ( + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + ) + dev-python/jinja[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + || ( + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + ) + >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}] + dev-python/statsmodels[${PYTHON_USEDEP}] + $(python_gen_cond_dep ' + >=dev-python/xarray-0.10.8[${PYTHON_USEDEP}] + ' python3_{6,7}) + >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + >=dev-python/scipy-1.1[${PYTHON_USEDEP}] + X? ( + || ( + dev-python/PyQt5[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) + ) +" +COMMON_DEPEND=" + >dev-python/numpy-1.15.4[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] +" +DEPEND="${COMMON_DEPEND} + >=dev-python/cython-0.29.21[${PYTHON_USEDEP}] + doc? ( + ${VIRTUALX_DEPEND} + app-text/pandoc + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/ipython[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/nbsphinx[${PYTHON_USEDEP}] + >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] + >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] + >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] + dev-python/rpy[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + x11-misc/xclip + ) + test? ( + ${VIRTUALX_DEPEND} + ${RECOMMENDED_DEPEND} + ${OPTIONAL_DEPEND} + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/hypothesis[${PYTHON_USEDEP}] + dev-python/nose[${PYTHON_USEDEP}] + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/pymysql[${PYTHON_USEDEP}] + >=dev-python/pytest-5.1[${PYTHON_USEDEP}] + dev-python/pytest-mock[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] + dev-python/psycopg:2[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) +" +# dev-python/statsmodels invokes a circular dep +# hence rm from doc? ( ), again +RDEPEND="${COMMON_DEPEND} + !minimal? ( ${RECOMMENDED_DEPEND} ) + full-support? ( ${OPTIONAL_DEPEND} ) +" + +python_prepare_all() { + # Prevent un-needed download during build + sed -e "/^ 'sphinx.ext.intersphinx',/d" \ + -i doc/source/conf.py || die + + # requires package installed + sed -e '/extra_compile_args =/s:"-Werror"::' \ + -i setup.py || die + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile -j1 +} + +python_compile_all() { + # To build docs the need be located in $BUILD_DIR, + # else PYTHONPATH points to unusable modules. + if use doc; then + cd "${BUILD_DIR}"/lib || die + cp -ar "${S}"/doc . && cd doc || die + LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html + fi +} + +src_test() { + virtx distutils-r1_src_test +} + +python_test() { + local deselect=( + # broken on practically any hardware/CFLAGS but the one + # the patch author was using + # https://github.com/pandas-dev/pandas/issues/38921 + pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues + + # weird issue, doesn't seem very important + 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]' + ) + + local -x LC_ALL=C.UTF-8 + pushd "${BUILD_DIR}"/lib > /dev/null || die + "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die + PYTHONPATH=. pytest pandas -vv --skip-slow --skip-network \ + ${deselect[@]/#/--deselect } \ + -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" \ + -m "not single" || die "Tests failed with ${EPYTHON}" + find . '(' -name .pytest_cache -o -name .hypothesis ')' \ + -exec rm -r {} + || die + popd > /dev/null || die +} + +python_install_all() { + if use doc; then + dodoc -r "${BUILD_DIR}"/lib/doc/build/html + einfo "An initial build of docs is absent of references to statsmodels" + einfo "due to circular dependency. To have them included, emerge" + einfo "statsmodels next and re-emerge pandas with USE doc" + fi + + distutils-r1_python_install_all +} + +pkg_postinst() { + optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck + optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" + optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml + optfeature "for msgpack compression using blosc" dev-python/blosc + optfeature "Template engine for conditional HTML formatting" dev-python/jinja + optfeature "Plotting support" dev-python/matplotlib + optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlwt + optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1" + optfeature "R I/O support" dev-python/rpy + optfeature "Needed for parts of pandas.stats" dev-python/statsmodels + optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1" + optfeature "miscellaneous statistical functions" dev-python/scipy + optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel +} diff --git a/dev-python/pandas/pandas-1.2.3-r2.ebuild b/dev-python/pandas/pandas-1.2.3-r2.ebuild deleted file mode 100644 index 34c943b38155..000000000000 --- a/dev-python/pandas/pandas-1.2.3-r2.ebuild +++ /dev/null @@ -1,191 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..9} ) -PYTHON_REQ_USE="threads(+)" - -VIRTUALX_REQUIRED="manual" - -inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx - -DESCRIPTION="Powerful data structures for data analysis and statistics" -HOMEPAGE="https://pandas.pydata.org/" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz" -S="${WORKDIR}/${P/_/}" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="~amd64 ~arm ~arm64 ~x86" -IUSE="doc full-support minimal test X" -RESTRICT="!test? ( test )" - -RECOMMENDED_DEPEND=" - >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}] - >=dev-python/numexpr-2.1[${PYTHON_USEDEP}] -" - -# TODO: add pandas-gbq to the tree -OPTIONAL_DEPEND=" - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/blosc[${PYTHON_USEDEP}] - || ( - dev-python/html5lib[${PYTHON_USEDEP}] - dev-python/lxml[${PYTHON_USEDEP}] - ) - dev-python/jinja[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - || ( - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/xlsxwriter[${PYTHON_USEDEP}] - ) - >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}] - dev-python/statsmodels[${PYTHON_USEDEP}] - $(python_gen_cond_dep ' - >=dev-python/xarray-0.10.8[${PYTHON_USEDEP}] - ' python3_{6,7}) - >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}] - >=dev-python/xlrd-1.0.0[${PYTHON_USEDEP}] - dev-python/xlwt[${PYTHON_USEDEP}] - >=dev-python/scipy-1.1[${PYTHON_USEDEP}] - X? ( - || ( - dev-python/PyQt5[${PYTHON_USEDEP}] - x11-misc/xclip - x11-misc/xsel - ) - ) -" -COMMON_DEPEND=" - >dev-python/numpy-1.15.4[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - dev-python/pytz[${PYTHON_USEDEP}] -" -DEPEND="${COMMON_DEPEND} - >=dev-python/cython-0.29.21[${PYTHON_USEDEP}] - doc? ( - ${VIRTUALX_DEPEND} - app-text/pandoc - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/html5lib[${PYTHON_USEDEP}] - dev-python/ipython[${PYTHON_USEDEP}] - dev-python/lxml[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/nbsphinx[${PYTHON_USEDEP}] - >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] - >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] - >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}] - dev-python/pytz[${PYTHON_USEDEP}] - dev-python/rpy[${PYTHON_USEDEP}] - dev-python/sphinx[${PYTHON_USEDEP}] - dev-python/xlrd[${PYTHON_USEDEP}] - dev-python/xlwt[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - x11-misc/xclip - ) - test? ( - ${VIRTUALX_DEPEND} - ${RECOMMENDED_DEPEND} - ${OPTIONAL_DEPEND} - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/hypothesis[${PYTHON_USEDEP}] - dev-python/nose[${PYTHON_USEDEP}] - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/pymysql[${PYTHON_USEDEP}] - >=dev-python/pytest-5.1[${PYTHON_USEDEP}] - dev-python/pytest-mock[${PYTHON_USEDEP}] - dev-python/pytest-xdist[${PYTHON_USEDEP}] - dev-python/psycopg:2[${PYTHON_USEDEP}] - dev-python/xlsxwriter[${PYTHON_USEDEP}] - x11-misc/xclip - x11-misc/xsel - ) -" -# dev-python/statsmodels invokes a circular dep -# hence rm from doc? ( ), again -RDEPEND="${COMMON_DEPEND} - !minimal? ( ${RECOMMENDED_DEPEND} ) - full-support? ( ${OPTIONAL_DEPEND} ) -" - -python_prepare_all() { - # Prevent un-needed download during build - sed -e "/^ 'sphinx.ext.intersphinx',/d" \ - -i doc/source/conf.py || die - - # requires package installed - sed -e '/extra_compile_args =/s:"-Werror"::' \ - -i setup.py || die - - distutils-r1_python_prepare_all -} - -python_compile() { - if use amd64 || use x86; then - # FMA apparently breaks rolling var/stdev - # https://github.com/pandas-dev/pandas/issues/38921 - append-flags -mno-fma - fi - - distutils-r1_python_compile -j1 -} - -python_compile_all() { - # To build docs the need be located in $BUILD_DIR, - # else PYTHONPATH points to unusable modules. - if use doc; then - cd "${BUILD_DIR}"/lib || die - cp -ar "${S}"/doc . && cd doc || die - LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html - fi -} - -src_test() { - virtx distutils-r1_src_test -} - -python_test() { - local deselect=( - # weird issue, doesn't seem very important - 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]' - ) - - local -x LC_ALL=C.UTF-8 - pushd "${BUILD_DIR}"/lib > /dev/null || die - "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die - PYTHONPATH=. pytest pandas -vv --skip-slow --skip-network \ - ${deselect[@]/#/--deselect } \ - -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" \ - -m "not single" || die "Tests failed with ${EPYTHON}" - find . '(' -name .pytest_cache -o -name .hypothesis ')' \ - -exec rm -r {} + || die - popd > /dev/null || die -} - -python_install_all() { - if use doc; then - dodoc -r "${BUILD_DIR}"/lib/doc/build/html - einfo "An initial build of docs is absent of references to statsmodels" - einfo "due to circular dependency. To have them included, emerge" - einfo "statsmodels next and re-emerge pandas with USE doc" - fi - - distutils-r1_python_install_all -} - -pkg_postinst() { - optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck - optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" - optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml - optfeature "for msgpack compression using blosc" dev-python/blosc - optfeature "Template engine for conditional HTML formatting" dev-python/jinja - optfeature "Plotting support" dev-python/matplotlib - optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt - optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1" - optfeature "R I/O support" dev-python/rpy - optfeature "Needed for parts of pandas.stats" dev-python/statsmodels - optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1" - optfeature "miscellaneous statistical functions" dev-python/scipy - optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel -} diff --git a/dev-python/pandas/pandas-1.2.3-r3.ebuild b/dev-python/pandas/pandas-1.2.3-r3.ebuild new file mode 100644 index 000000000000..fe8f3d8903ee --- /dev/null +++ b/dev-python/pandas/pandas-1.2.3-r3.ebuild @@ -0,0 +1,189 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_REQ_USE="threads(+)" + +VIRTUALX_REQUIRED="manual" + +inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx + +DESCRIPTION="Powerful data structures for data analysis and statistics" +HOMEPAGE="https://pandas.pydata.org/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz" +S="${WORKDIR}/${P/_/}" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="~amd64 ~arm ~arm64 ~x86" +IUSE="doc full-support minimal test X" +RESTRICT="!test? ( test )" + +RECOMMENDED_DEPEND=" + >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}] + >=dev-python/numexpr-2.1[${PYTHON_USEDEP}] +" + +# TODO: add pandas-gbq to the tree +OPTIONAL_DEPEND=" + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/blosc[${PYTHON_USEDEP}] + || ( + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + ) + dev-python/jinja[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + || ( + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + ) + >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}] + dev-python/statsmodels[${PYTHON_USEDEP}] + $(python_gen_cond_dep ' + >=dev-python/xarray-0.10.8[${PYTHON_USEDEP}] + ' python3_{6,7}) + >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + >=dev-python/scipy-1.1[${PYTHON_USEDEP}] + X? ( + || ( + dev-python/PyQt5[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) + ) +" +COMMON_DEPEND=" + >dev-python/numpy-1.15.4[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] +" +DEPEND="${COMMON_DEPEND} + >=dev-python/cython-0.29.21[${PYTHON_USEDEP}] + doc? ( + ${VIRTUALX_DEPEND} + app-text/pandoc + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/ipython[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/nbsphinx[${PYTHON_USEDEP}] + >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] + >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] + >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] + dev-python/rpy[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + x11-misc/xclip + ) + test? ( + ${VIRTUALX_DEPEND} + ${RECOMMENDED_DEPEND} + ${OPTIONAL_DEPEND} + dev-python/beautifulsoup:4[${PYTHON_USEDEP}] + dev-python/hypothesis[${PYTHON_USEDEP}] + dev-python/nose[${PYTHON_USEDEP}] + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/pymysql[${PYTHON_USEDEP}] + >=dev-python/pytest-5.1[${PYTHON_USEDEP}] + dev-python/pytest-mock[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] + dev-python/psycopg:2[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) +" +# dev-python/statsmodels invokes a circular dep +# hence rm from doc? ( ), again +RDEPEND="${COMMON_DEPEND} + !minimal? ( ${RECOMMENDED_DEPEND} ) + full-support? ( ${OPTIONAL_DEPEND} ) +" + +python_prepare_all() { + # Prevent un-needed download during build + sed -e "/^ 'sphinx.ext.intersphinx',/d" \ + -i doc/source/conf.py || die + + # requires package installed + sed -e '/extra_compile_args =/s:"-Werror"::' \ + -i setup.py || die + + distutils-r1_python_prepare_all +} + +python_compile() { + if use amd64 || use x86; then + # FMA apparently breaks rolling var/stdev + # https://github.com/pandas-dev/pandas/issues/38921 + append-flags -mno-fma + fi + + distutils-r1_python_compile -j1 +} + +python_compile_all() { + # To build docs the need be located in $BUILD_DIR, + # else PYTHONPATH points to unusable modules. + if use doc; then + cd "${BUILD_DIR}"/lib || die + cp -ar "${S}"/doc . && cd doc || die + LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html + fi +} + +src_test() { + virtx distutils-r1_src_test +} + +python_test() { + local deselect=( + # weird issue, doesn't seem very important + 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]' + ) + + local -x LC_ALL=C.UTF-8 + pushd "${BUILD_DIR}"/lib > /dev/null || die + "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die + PYTHONPATH=. pytest pandas -vv --skip-slow --skip-network \ + ${deselect[@]/#/--deselect } \ + -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" \ + -m "not single" || die "Tests failed with ${EPYTHON}" + find . '(' -name .pytest_cache -o -name .hypothesis ')' \ + -exec rm -r {} + || die + popd > /dev/null || die +} + +python_install_all() { + if use doc; then + dodoc -r "${BUILD_DIR}"/lib/doc/build/html + einfo "An initial build of docs is absent of references to statsmodels" + einfo "due to circular dependency. To have them included, emerge" + einfo "statsmodels next and re-emerge pandas with USE doc" + fi + + distutils-r1_python_install_all +} + +pkg_postinst() { + optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck + optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" + optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml + optfeature "for msgpack compression using blosc" dev-python/blosc + optfeature "Template engine for conditional HTML formatting" dev-python/jinja + optfeature "Plotting support" dev-python/matplotlib + optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlwt + optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1" + optfeature "R I/O support" dev-python/rpy + optfeature "Needed for parts of pandas.stats" dev-python/statsmodels + optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1" + optfeature "miscellaneous statistical functions" dev-python/scipy + optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel +} -- cgit v1.2.3-65-gdbad