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* sci-libs/rocBLAS: add 5.4.2Yiyang Wu2023-01-316-0/+185
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/29319 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocBLAS: add github upstream metadataYiyang Wu2023-01-311-4/+7
| | | | | Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/vtk: fix build with gcc-13Bernd Waibel2023-01-303-0/+52
| | | | | | | | | Add #include <cstdint> to build with gcc-13 Closes: https://bugs.gentoo.org/892435 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/29329 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: drop old 2.5.1-r4Sergey Torokhov2023-01-303-276/+0
| | | | | Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cantera: 2.6.0-r2 revision bumpSergey Torokhov2023-01-302-0/+200
| | | | | | | | | | | | | | | 1. EAPI8 bump 2. Add Python 3.11 compat, rm deprecated open U option (upstream patch) 3. Rectrict USE=lapack with >=sci-libs/sundials-6.5.0[lapack?] 4. Set std=c++14 to avoid build fail with upcoming dev-libs/boost-1.82 and sci-libs/sundials-6.5.0 detection (the last is strange). Bug: https://bugs.gentoo.org/888667 Closes: https://bugs.gentoo.org/888527 Closes: https://bugs.gentoo.org/890427 Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cfitsio: add 4.2.0Mario Haustein2023-01-294-0/+160
| | | | | | Signed-off-by: Mario Haustein <mario.haustein@hrz.tu-chemnitz.de> Closes: https://github.com/gentoo/gentoo/pull/28666 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cartopy: drop 0.21.0-r1Thomas Beierlein2023-01-292-82/+0
| | | | Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/cartopy: Fix dependencyThomas Beierlein2023-01-291-2/+2
| | | | | Closes: https://bugs.gentoo.org/891231 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/opencascade: drop 7.5.3-r8Bernd Waibel2023-01-286-429/+0
| | | | | | | | | Cleanup old. No consumers left for this version in ::gentoo. There's one consumer for that version in the ::science repo. Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/29296 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/votca-tools: treecleanJakov Smolić2023-01-274-105/+0
| | | | | | Closes: https://bugs.gentoo.org/841830 Closes: https://bugs.gentoo.org/862444 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/libgenome: treecleanJakov Smolić2023-01-274-78/+0
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/libmems: treecleanJakov Smolić2023-01-2711-392/+0
| | | | | Closes: https://bugs.gentoo.org/677558 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/opencascade: drop 7.5.2-r6Zoltan Puskas2023-01-272-176/+0
| | | | | | Signed-off-by: Zoltan Puskas <zoltan@sinustrom.info> Closes: https://github.com/gentoo/gentoo/pull/29293 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/libigl: drop 2.3.0Andreas Sturmlechner2023-01-262-52/+0
| | | | | Bug: https://bugs.gentoo.org/888525 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: fix build w/ gcc 13Sam James2023-01-262-1/+116
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: drop native CUDA archBernd Waibel2023-01-233-6/+50
| | | | | | | | | | Backport from 9.2.5, until detection is fixed upstream, don't allow the use of VTK_CUDA_ARCH=native. Bug: https://bugs.gentoo.org/835659 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/29200 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/vtk: add 9.2.5Bernd Waibel2023-01-232-0/+749
| | | | | | | | | | | | | | - Add Python 3.11 support. - Simplifiy test logic. The VTK_FORBID_DOWNLOADS option now also works when testing is enabled, if all data files are downloaded and regenerated before testing. - Drop native CUDA arch as long as detection isn't fixed upstream. Bug: https://gitlab.kitware.com/vtk/vtk-m/issues/693 Bug: https://bugs.gentoo.org/835659 Closes: https://bugs.gentoo.org/890269 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pdal: bump 2.5.0Thomas Bettler2023-01-203-0/+156
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/29173 Signed-off-by: Thomas Bettler <thomas.bettler@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libcmatrix: Remove last-rited pkgMichał Górny2023-01-1911-497/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/brial: add 1.2.12François Bissey2023-01-162-0/+37
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/29111 Closes: https://bugs.gentoo.org/890425 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> Signed-off-by: François Bissey <frp.bissey@gmail.com>
* sci-libs/fplll: add 5.4.4François Bissey2023-01-162-0/+30
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/29113 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> Signed-off-by: François Bissey <frp.bissey@gmail.com>
* */*: remove py3.8 from PYTHON_COMPATDavid Seifert2023-01-1454-103/+103
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/inchi: Stabilize 1.06-r1 ppc, #883913Arthur Zamarin2023-01-131-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libqalculate: Stabilize 4.3.0 sparc, #888908Arthur Zamarin2023-01-131-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 ppc, #889810Arthur Zamarin2023-01-131-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/symmetrica: update EAPI 7 -> 8Michael Orlitzky2023-01-131-0/+24
| | | | | Closes: https://bugs.gentoo.org/890668 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/caffe2: fix build with clangAlfredo Tupone2023-01-122-0/+44
| | | | | Closes: https://bugs.gentoo.org/886273 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/gloo: require openssl 1.1Alfredo Tupone2023-01-121-2/+2
| | | | | Closes: https://bugs.gentoo.org/886279 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/NNPACK: drop changes to optimization optionAlfredo Tupone2023-01-111-1/+6
| | | | | Closes: https://bugs.gentoo.org/886357 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/keras: Remove Python < 3.10Michał Górny2023-01-102-4/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/tensorflow-estimator: Remove Python < 3.10Michał Górny2023-01-102-4/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/tensorflow: Remove Python < 3.10Michał Górny2023-01-102-4/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikit-image: drop 0.19.3Arthur Zamarin2023-01-101-54/+0
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libigl: Stabilize 2.4.0 amd64, #888525Sam James2023-01-091-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 x86, #889810Sam James2023-01-051-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 amd64, #889810Sam James2023-01-051-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 arm64, #889810Sam James2023-01-051-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 ppc64, #889810Sam James2023-01-051-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: add 3.6.2Sam James2023-01-052-0/+245
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/caffe2: remove last WerrorAlfredo Tupone2023-01-041-11/+27
| | | | | Closes: https://bugs.gentoo.org/889444 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/opencascade: simplify vtk logic (v7.6.3)Bernd Waibel2023-01-041-7/+4
| | | | | | | | Backport patch from v7.7.0 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/28932 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: simplify vtk logic (v7.7.0)Bernd Waibel2023-01-041-7/+4
| | | | | | | | Avoid using conditional logic to determine the include directory for VTK. Suggested-by: Sam James <sam@gentoo.org> Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Sam James <sam@gentoo.org>
* */*: make mycmakeargs localDavid Seifert2023-01-031-2/+2
| | | | | Closes: https://github.com/gentoo/gentoo/pull/28947 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/pytorch: use single python classAlfredo Tupone2023-01-031-4/+9
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: inherit single and mv api in python dirAlfredo Tupone2023-01-031-13/+13
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/dealii: fix missing dependency on sci-mathematics/cgalMatthias Maier2023-01-021-1/+2
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/mumps: avoid a race conditionMatthias Maier2023-01-021-2/+3
| | | | | Closes: https://bugs.gentoo.org/889072 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: add 6.5.0Matthias Maier2023-01-022-0/+118
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/pyshp: Add missing test depThomas Beierlein2023-01-021-3/+4
| | | | | Closes: https://bugs.gentoo.org/888735 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* */*: adapt to USE=heif being a global USE flagSam James2022-12-311-1/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>