diff options
Diffstat (limited to 'dev-python/scipy')
| -rw-r--r-- | dev-python/scipy/Manifest | 2 | ||||
| -rw-r--r-- | dev-python/scipy/scipy-1.13.1.ebuild | 166 |
2 files changed, 168 insertions, 0 deletions
diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest index e85df05734f7..308e1728a20c 100644 --- a/dev-python/scipy/Manifest +++ b/dev-python/scipy/Manifest @@ -2,6 +2,8 @@ DIST scipy-1.11.3.tar.gz 56335652 BLAKE2B 2b35c24522b2bd498b4ebe84a854c8ec1e6291 DIST scipy-1.11.4.tar.gz 56336202 BLAKE2B a2091a1edb54eb73c2de6ed8c62a7e571f37b247c9af50947aa97b739342c96b87b20a82b1a238c859fa532c84249cbadde228366dcea3555e9a506c1ae55031 SHA512 2eb403f6de9723b411d948b8e1b5457078704c605b8e760d42362c82d802e167eaaf701ddb8b480af2bdf2efe4dbf66fcc4e97321519bb8dab19b0e2a8976beb DIST scipy-1.12.0.tar.gz 56811768 BLAKE2B 03c142274f1466747935fa54fab427f3a48c1642406211fa1a0f8ad5e0f194baecf76182e0448a0fb647063871483239cd876ce431cd9406e396e6170912ab64 SHA512 376ed94c4caaf782814bb07047fff0b363f7b608a0399697c6e862432333cbe6d3abb351730a574a3f077b3cdd9cb7474090a460baffcfbd5546bcfee309b6e7 DIST scipy-1.13.0.tar.gz 57204550 BLAKE2B cfbb4e76efae952854e9ff4ed254e9819b58d224906e1ded3c6a914b1e28b5fad15f8bbbb4a9c413969d6e4b1faf4e0038a36729171ff06e640b241a9dd4af94 SHA512 9bd6fd3f76742a07e5bb003edf4c0e3a82edf749077502fbce3d16fe595d455846edcf57db12ec0a9d4792803e974355362d919047414badfcaededf1e4343f7 +DIST scipy-1.13.1.tar.gz 57210720 BLAKE2B d58d673de9b8d6239a3de285982d65ba1baf0ca8b623276c19b85b1f4bb83c56e66c32d7a22d1d602435cfa086b5d56167cac55bdda608590aaddf677844f060 SHA512 28aafdbcae7229a3d11f192683b703cb485d45e4d90413d6564df3d9005bc8fd4df8bd92caffe657666828cd7253e7e0363c0948c74a1b8f3f3b7d4f4cfd9b36 DIST scipy-html-1.11.0.zip 50421508 BLAKE2B cb5e4a4f8817a80f54ae73b4a47ba22d2438df46ebfe27ef5fdc2695fdd983226f4ccae925bf82b15d01ced4f4b6807384ecadac5e1aa7700aa887ad06b7d065 SHA512 33718bbd5e828687d93fccc441a53b6a2e8f54ac4952d3b69d4c4668f55cb6ef5aba33df9acda20b2400effa5ae71767b2a5602a365ad2045a6edd24ff89c253 DIST scipy-html-1.11.2.zip 50435722 BLAKE2B 460c67509a8bf50986f866ee2f90e634af21ddd71508efeef5681c2ee2130c3f79b4b428bc21277bfb310bb45ccad1fb38221ada43620055377cdc4839b9d1e5 SHA512 986a6e37f9e01dc4925ef22af6ff660bae1e4b66e57270262974c207dfb70285e3f8f548774d6e81d5f457b9198c0ba1c06e6d689fe5d54fdea878c1e5a7f797 DIST scipy-html-1.13.0.zip 65327245 BLAKE2B 5e5ffbf4ff4a28c5a003da0e5170ef5eef1b430ecca0284a89aed5f96f7afc549db001beb2e56b3debbd3527c57b773b25c35579b32d8a6d8e5e97a75db4d38b SHA512 792c32f077d76d47e42d02c5047990a6afdcdc9c31dcc7e9987e7a5aa62c56aec44dcf7d14e3f94ae59f8fb718ce89a2835b87d2aef7a16ce9a534361b7329d7 +DIST scipy-html-1.13.1.zip 65288062 BLAKE2B 4eea1277870fcc0070d543139ef8b786d3c6841835601eb5447fed042d03035edfb556f824ccbf9946f1efa41da75372df1dd3789d045bdbaea7e156010bb8e6 SHA512 fc70eb7fa3763e40f2389ad31e1a78fcd2aa1b3db40927f57a583692143001c8b6a8f3f0ddea47eaf62adb30d1207765d8887a2a53baa1b8ed706b7fb348bbbf diff --git a/dev-python/scipy/scipy-1.13.1.ebuild b/dev-python/scipy/scipy-1.13.1.ebuild new file mode 100644 index 000000000000..0f7cff9b94e5 --- /dev/null +++ b/dev-python/scipy/scipy-1.13.1.ebuild @@ -0,0 +1,166 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=fortran +DISTUTILS_EXT=1 +DISTUTILS_USE_PEP517=meson-python +PYTHON_COMPAT=( pypy3 python3_{10..12} ) +PYTHON_REQ_USE="threads(+)" + +inherit fortran-2 distutils-r1 + +DESCRIPTION="Scientific algorithms library for Python" +HOMEPAGE=" + https://scipy.org/ + https://github.com/scipy/scipy/ + https://pypi.org/project/scipy/ +" + +if [[ ${PV} == *9999* ]] ; then + inherit git-r3 + + # Need submodules, so git for now. + EGIT_REPO_URI="https://github.com/scipy/scipy" + EGIT_BRANCH="maintenance/$(ver_cut 1-2).x" + EGIT_SUBMODULES=( '*' ) +else + inherit pypi + + # Upstream is often behind with doc updates + DOC_PV=${PV} + + SRC_URI+=" + doc? ( + https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip + )" + + if [[ ${PV} != *rc* ]] ; then + KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86" + fi +fi + +LICENSE="BSD LGPL-2" +SLOT="0" +IUSE="doc +fortran test-rust" + +# umfpack is technically optional but it's preferred to have it available. +DEPEND=" + >=dev-python/numpy-1.22.4:=[lapack,${PYTHON_USEDEP}] + sci-libs/arpack:= + sci-libs/umfpack + virtual/cblas + >=virtual/lapack-3.8 +" +RDEPEND=" + ${DEPEND} + dev-python/pillow[${PYTHON_USEDEP}] +" +BDEPEND=" + dev-lang/swig + >=dev-python/cython-3.0.8[${PYTHON_USEDEP}] + >=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}] + >=dev-python/pybind11-2.12.0[${PYTHON_USEDEP}] + >=dev-build/meson-1.1.0 + !kernel_Darwin? ( dev-util/patchelf ) + virtual/pkgconfig + doc? ( app-arch/unzip ) + fortran? ( >=dev-python/pythran-0.14.0[${PYTHON_USEDEP}] ) + test? ( + >=dev-python/hypothesis-6.30[${PYTHON_USEDEP}] + ) + test-rust? ( + dev-python/pooch[${PYTHON_USEDEP}] + ) +" + +EPYTEST_XDIST=1 +distutils_enable_tests pytest + +src_unpack() { + default + + if use doc; then + unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die + fi +} + +python_configure_all() { + DISTUTILS_ARGS=( + -Dblas=blas + -Dlapack=lapack + -Duse-pythran=$(usex fortran true false) + ) + + # hide real scipy, to prevent pythran crashing when scipy is being + # rebuilt for new numpy ABI + # https://github.com/serge-sans-paille/pythran/issues/2194 + cat >> "${T}/scipy.py" <<-EOF || die + raise ImportError("hide real scipy") + EOF +} + +python_compile() { + local -x PYTHONPATH="${T}${PYTHONPATH+:${PYTHONPATH}}" + distutils-r1_python_compile +} + +python_test() { + cd "${BUILD_DIR}/install$(python_get_sitedir)" || die + + local EPYTEST_DESELECT=( + # Network + scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all + scipy/datasets/tests/test_data.py::TestDatasets::test_ascent + scipy/datasets/tests/test_data.py::TestDatasets::test_face + scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram + + # Precision issue with diff. blas? + scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799 + + # Crashes with assertion, not a regression + # https://github.com/scipy/scipy/issues/19321 + scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object + + # timeouts + scipy/sparse/linalg/tests/test_propack.py::test_examples + # hang or incredibly slow + scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient + scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient + + # TODO + scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems + ) + local EPYTEST_IGNORE=() + + if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then + EPYTEST_IGNORE+=( + scipy/datasets/tests/test_data.py + ) + fi + + case ${EPYTHON} in + pypy3) + EPYTEST_DESELECT+=( + # fd leaks in tests + # https://github.com/scipy/scipy/issues/19553 + scipy/fft/_pocketfft/tests/test_real_transforms.py + # TODO + 'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]' + # missing dict.__ror__ + # https://github.com/pypy/pypy/issues/4934 + 'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]' + ) + ;; + esac + + local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1 + epytest scipy +} + +python_install_all() { + use doc && local HTML_DOCS=( "${WORKDIR}"/html/. ) + + distutils-r1_python_install_all +} |