proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

3 files changed, 84 insertions, 0 deletions

diff --git a/sci-mathematics/bertini/Manifest b/sci-mathematics/bertini/Manifest
new file mode 100644
index 000000000000..6140e74e98d1
--- /dev/null
+++ b/sci-mathematics/bertini/Manifest
@@ -0,0 +1 @@
+DIST BertiniSource_v1.4.tar.gz 1827401 SHA256 61ce11b2714d1540311c1a8e3192ff92bfbd8fd85c357b554d22ab6cbe67f6a1 SHA512 bb53f8ed24a0f21e95b4e373be36039b69ea0ddb11ad8240bcf52ce64436a56c1f2057a5d733d017fdf68cfb3598a473e1f12b4659308890e2e2575b7d8143f6 WHIRLPOOL f832076f0c2277c35df28d7ed94476e1ec086c5fcb4a80e52fd3cd2d5fce79ecbc66606ba1cb0f71ca0fa6180c0e82e79b5cc85eb5949de64b6c9d8e2e8b7e6a
diff --git a/sci-mathematics/bertini/bertini-1.4.ebuild b/sci-mathematics/bertini/bertini-1.4.ebuild
new file mode 100644
index 000000000000..b6b7c6504c07
--- /dev/null
+++ b/sci-mathematics/bertini/bertini-1.4.ebuild
@@ -0,0 +1,58 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit toolchain-funcs
+
+MYP="BertiniSource_v${PV}"
+
+DESCRIPTION="Software for Numerical Algebraic Geometry"
+HOMEPAGE="http://bertini.nd.edu"
+
+SRC_URI="http://www3.nd.edu/~sommese/bertini/${MYP}.tar.gz"
+
+LICENSE="bertini"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc examples +optimization"
+DEPEND="
+	sys-devel/bison
+	sys-devel/flex
+"
+RDEPEND="
+	dev-libs/gmp
+	dev-libs/mpfr
+"
+
+S="${WORKDIR}/${MYP}/src"
+
+src_prepare() {
+	if ! use optimization; then
+		sed -i -e "s/\$(OPT)/ ${CXXFLAGS} ${LDFLAGS}/" Makefile
+	else
+		sed -i -e "s/\$(OPT)/ \$(OPT) ${LDFLAGS}/" Makefile
+	fi
+	sed -i -e "s/gcc/$(tc-getCC)/" Makefile
+}
+
+src_configure() {
+	:
+}
+
+src_compile() {
+	emake
+}
+
+src_install() {
+	dobin bertini
+	if use doc; then
+		dodoc "${WORKDIR}/${MYP}/BertiniUsersManual.pdf"
+	fi
+	if use examples; then
+		insinto "/usr/share/${PN}"
+		doins -r "${WORKDIR}/${MYP}/examples"
+		elog "Examples have been installed into /usr/share/${MYP}"
+	fi
+}
diff --git a/sci-mathematics/bertini/metadata.xml b/sci-mathematics/bertini/metadata.xml
new file mode 100644
index 000000000000..e79bcd17ddc7
--- /dev/null
+++ b/sci-mathematics/bertini/metadata.xml
@@ -0,0 +1,25 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-mathematics</herd>
+  <maintainer>
+    <email>tomka@gentoo.org</email>
+  </maintainer>
+  <longdescription>
+Bertini: Software for Numerical Algebraic Geometry
+
+Facts in brief:
+
+    Purpose: The numerical solution of systems of polynomial equations
+
+    Approach: Homotopy continuation.
+    
+    Authors: Daniel J. Bates, Jonathan D. Hauenstein, Andrew J. Sommese, Charles W. Wampler
+    
+    Background: Bertini is a general-purpose solver, written in C, that was
+    created for research about polynomial continuation.
+</longdescription>
+<use>
+  <flag name="optimization">Accept upstream's choices for -O option.</flag>
+</use>
+</pkgmetadata>