diff options
| author |   Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in> | 2024-01-09 14:05:39 +0500 |
|---|---|---|
| committer | Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in> | 2024-01-09 14:06:03 +0500 |
| commit | aa759c4c98861c3b3e6b50cc154c76732930eb9f (patch) | |
| tree | f034573173911b1e7f238c8296929a204754f336 /sci-biology | |
| parent | Revert "sci-biology/cmdock: remove unused patches" (diff) | |
| download | guru-aa759c4c98861c3b3e6b50cc154c76732930eb9f.tar.gz guru-aa759c4c98861c3b3e6b50cc154c76732930eb9f.tar.bz2 guru-aa759c4c98861c3b3e6b50cc154c76732930eb9f.zip | |
sci-biology/cmdock: drop *really* unused files
Closes: https://bugs.gentoo.org/921229
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/cmdock/cmdock-0.2.0.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/cmdock/files/app_info_0.1.4.xml | 40 | ||||
| -rw-r--r-- | sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch | 15 | ||||
| -rw-r--r-- | sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml | 15 |
4 files changed, 2 insertions, 72 deletions
diff --git a/sci-biology/cmdock/cmdock-0.2.0.ebuild b/sci-biology/cmdock/cmdock-0.2.0.ebuild index 66b5b8b5e..c54bed6f9 100644 --- a/sci-biology/cmdock/cmdock-0.2.0.ebuild +++ b/sci-biology/cmdock/cmdock-0.2.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 2021-2022 Gentoo Authors +# Copyright 2021-2024 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -PYTHON_COMPAT=( python3_{10..11} ) +PYTHON_COMPAT=( python3_{10..12} ) BOINC_APP_OPTIONAL="true" inherit boinc-app flag-o-matic meson optfeature python-any-r1 diff --git a/sci-biology/cmdock/files/app_info_0.1.4.xml b/sci-biology/cmdock/files/app_info_0.1.4.xml deleted file mode 100644 index 923a7b9ac..000000000 --- a/sci-biology/cmdock/files/app_info_0.1.4.xml +++ /dev/null @@ -1,40 +0,0 @@ -<app_info> -<app> - <name>cmdock-boinc-zcp</name> - <user_friendly_name>CurieMarieDock on BOINC + zipped input, checkpoints and progress bar</user_friendly_name> -</app> - -<file_info> - <name>cmdock-boinc-zcp_wrapper_@PV@</name> - <sticky/> - <executable/> -</file_info> - -<file_info> - <name>cmdock-boinc-zcp_job_@PV@.xml</name> - <sticky/> -</file_info> -<file_info> - <name>docking_out.sd</name> - <sticky/> -</file_info> - -<app_version> - <app_name>cmdock-boinc-zcp</app_name> - <version_num>200</version_num> - <file_ref> - <file_name>cmdock-boinc-zcp_wrapper_@PV@</file_name> - <main_program/> - </file_ref> - <file_ref> - <file_name>cmdock-boinc-zcp_job_@PV@.xml</file_name> - <open_name>job.xml</open_name> - <copy_file/> - </file_ref> - <file_ref> - <file_name>docking_out</file_name> - <open_name>docking_out</open_name> - <copy_file/> - </file_ref> -</app_version> -</app_info> diff --git a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch b/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch deleted file mode 100644 index fceae1e5c..000000000 --- a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch +++ /dev/null @@ -1,15 +0,0 @@ ---- a/meson.build -+++ b/meson.build -@@ -79,8 +79,10 @@ - - cpp_compiler = meson.get_compiler('cpp') - --extended_encoders_available = (cpp_compiler.has_header('emmintrin.h') and -- host_machine.cpu_family() == 'x86' and host_machine.cpu_family() == 'x86_64') -+extended_encoders_available = ( -+ cpp_compiler.has_header('emmintrin.h') and -+ (host_machine.cpu_family() == 'x86' or host_machine.cpu_family() == 'x86_64') -+) - - if not extended_encoders_available - add_project_arguments('-DBUNDLE_NO_SSE', language: 'cpp') diff --git a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml deleted file mode 100644 index 074bb29d4..000000000 --- a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml +++ /dev/null @@ -1,15 +0,0 @@ -<job_desc> - <task> - <application>@PREFIX@/build/cmdock</application> - <stdout_filename>docking_log</stdout_filename> - <command_line>-c -j 1 -r target.prm -p @PREFIX@/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line> - <checkpoint_filename>docking_out.chk</checkpoint_filename> - <fraction_done_filename>docking_out.progress</fraction_done_filename> - <setenv>CMDOCK_ROOT=@PREFIX@</setenv> - <setenv>LD_LIBRARY_PATH=@PREFIX@/build:$LD_LIBRARY_PATH</setenv> - <setenv>PERL5LIB=@PREFIX@/lib:$PERL5LIB</setenv> - </task> - <unzip_input> - <zipfilename>ligands.zip</zipfilename> - </unzip_input> -</job_desc> |