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* Stable for x86, wrt bug #527402Agostino Sarubbo2014-12-263-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* sci-biology/seqan: Test for SSE4.1 support, #531876Justin Lecher2014-12-263-18/+29
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for amd64 wrt bug #527402José María Alonso2014-12-223-22/+23
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xF253DB15
* Drop perl herd from metadataAndreas Hüttel2014-12-193-18/+20
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xEBE6A336BE19039C!
* sci-biology/rebase: Version BumpJustin Lecher2014-12-023-16/+69
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Replace fixlocalpod with perl_delete_localpodAndreas Hüttel2014-11-164-24/+28
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xEBE6A336BE19039C!
* Update PostgreSQL dependencies and/or checks to virtual/postgresql.Aaron Swenson2014-11-034-15/+15
| | | | | Package-Manager: portage-2.2.8-r2/cvs/Linux x86_64 Manifest-Sign-Key: 0xD1BBFDA0
* Stable for amd64 wrt bug #525378José María Alonso2014-11-033-22/+23
| | | | | Package-Manager: portage-2.2.8-r2/cvs/Linux x86_64 Manifest-Sign-Key: 0xF253DB15
* sci-biology/stride: Fix 404 on patches, #525346Justin Lecher2014-10-313-19/+22
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BumpJustin Lecher2014-10-303-2/+77
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/consed: Import to tree; drop old EPAI=1 version, #526742Justin Lecher2014-10-264-80/+119
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Remove old due to old EAPIAndreas Hüttel2014-10-253-81/+23
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xEBE6A336BE19039C!
* sci-biology/seqan: Fix file collision, #526586Justin Lecher2014-10-243-18/+27
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Fix headerPatrick Lauer2014-10-196-40/+25
| | | | Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64
* sci-biology/seqan: Version BUmpJustin Lecher2014-10-175-17/+122
| | | | | Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Non-maintainer commit: fix building, approved by Justin LecherSergey Popov2014-10-173-23/+22
| | | | | Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* sci-biology/stride: Put patches in my devspace, #525346Justin Lecher2014-10-144-50/+30
| | | | | Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/express: Version BUmp; thanks Michael Schubert for the initial ↵Justin Lecher2014-10-134-11/+120
| | | | | | | patch, #525188 Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/cufflinks: Drop debugging flags, fix compatibility with newer ↵Justin Lecher2014-10-025-16/+120
| | | | | | | samtools, #524252 Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BUmpJustin Lecher2014-09-303-24/+55
| | | | | Package-Manager: portage-2.2.14_rc1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/cufflinks: Version BUmpJustin Lecher2014-09-253-16/+62
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/cufflinks: Fix dep due to uncompatible samtools releaseJustin Lecher2014-09-253-13/+25
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Install bam headers and create libbam.so, #523644Justin Lecher2014-09-254-16/+156
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Add missing build dep, #523586Justin Lecher2014-09-243-21/+25
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/plink: Rename USE lapack -> blas, fixing build problems, #514106Justin Lecher2014-09-223-23/+29
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Version Bump, #523224; drop oldJustin Lecher2014-09-207-169/+104
| | | | | Package-Manager: portage-2.2.13/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/vienna-rna: Version Bump, #522850Justin Lecher2014-09-154-9/+152
| | | | | Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Drop ebuild with deprecated EAPIJustin Lecher2014-09-153-71/+19
| | | | | Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BumpJustin Lecher2014-09-153-17/+72
| | | | | Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* ppc stable wrt bug #520776; Drop old.Mikle Kolyada2014-08-294-119/+14
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xC42EB5D6
* Stable on amd64 and x86, wrt bug #520776Sergey Popov2014-08-293-12/+15
| | | | | Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* QA: move AUTOTOOLS_IN_SOURCE_BUILD definition beforce inheriting autotools ↵Sergey Popov2014-08-293-23/+20
| | | | | | | eclass, drop obsolete python 2.6 support Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* bumped EAPI to 5 to support dev-lang/perl upgradesIan Stakenvicius2014-08-273-11/+17
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* QA: drop trailing '.' from DESCRIPTIONSergei Trofimovich2014-08-108-29/+33
| | | | | Package-Manager: portage-2.2.11_p9/cvs/Linux x86_64 Manifest-Sign-Key: 0x611FF3AA
* Bump to EAPI=5 (bug #478714)Mikle Kolyada2014-08-0920-90/+99
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xC42EB5D6
* Stable for ppc, wrt bug #512118Agostino Sarubbo2014-08-033-23/+23
| | | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* sci-biology/rebase: Version BumpJustin Lecher2014-07-313-17/+72
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Non-maintainer commit. Update to use virtual/mysql wrt bug 508802Brian Evans2014-07-306-23/+30
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0x67C78E1D
* x86 stable wrt bug #512118Paweł Hajdan2014-07-273-12/+21
| | | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux i686 RepoMan-Options: --ignore-arches Manifest-Sign-Key: 0x4F1A2555EA71991D!
* Stable for amd64 wrt bug #512118José María Alonso2014-07-173-22/+17
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xD628E536
* version bump; license changed, is slightly more lax nowIan Stakenvicius2014-07-163-7/+98
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* Bump to EAPI=5Mikle Kolyada2014-07-153-13/+17
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xC42EB5D6
* Depend on virtual/perl-x instead of perl-core/xAndreas Hüttel2014-07-103-12/+27
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xEBE6A336BE19039C!
* Remove oldAndreas Hüttel2014-07-093-40/+23
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xEBE6A336BE19039C!
* sci-biology/infernal: Add patch as binary to prevent CVS magics, #431076Justin Lecher2014-07-064-29/+54
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/abyss: Add missing dep on boost, #515156Justin Lecher2014-07-063-26/+10
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/ncbi-tools++ removal. This version doesn't build with gnutls-3. ↵Manuel Rüger2014-06-3010-1173/+0
| | | | See bug #421777.
* Convert to distutils-r1. Depend on setuptools.Mike Gilbert2014-06-304-29/+39
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0x0BBEEA1FEA4843A4
* sci-biology/rebase: Version BUmp, fixes broken snapshot, #512286Justin Lecher2014-06-043-5/+33
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/biopython: Version Bump, thanks Martin Mokrejs ↵Justin Lecher2014-06-033-16/+71
| | | | | | | <mmokrejs@fold.natur.cuni.cz> preparing the ebuild Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!