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* sci-biology/fasttree: Version BUmp, #494662Justin Lecher2013-12-205-9/+112
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Cleanup old.Manuel Rüger2013-12-154-86/+6
| | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64
* Stable for amd64, wrt bug #488414Agostino Sarubbo2013-12-153-19/+22
| | | | | | Package-Manager: portage-2.2.1/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* x86 stable, bug #488414Johannes Huber2013-12-073-5/+28
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xF3CFD2BD
* sci-biology/samtools: Fix underlinkingJustin Lecher2013-12-064-19/+25
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Keyword for *-linux, tested by meJustin Lecher2013-12-067-33/+38
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BumpJustin Lecher2013-12-013-22/+55
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* NMU: Add missing dependency on libxml and ruby20 support. Fix tests see bug ↵Manuel Rüger2013-11-255-15/+83
| | | | | | #489712 Package-Manager: portage-2.2.7/cvs/Linux x86_64
* Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a ↵Johann Schmitz2013-11-244-87/+14
| | | | | | | snapshotted version of the lastest version is in the tree (#491816). Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0x77C501ED
* Version bump and reworked ebuild for sci-biology/picard. Uses a snapshotted ↵Johann Schmitz2013-11-245-9/+228
| | | | | | | tarball from upstreams 1.103 subversion tag to meet gentoo qa requirements (wrt #491816) Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0x77C501ED
* superseeded by sci-biology/allpathslgJustin Lecher2013-11-2011-960/+0
| | | | Upstream wants anybody to move over
* Removing x86 keyword as dependency sci-biology/vaal does not work on x86Patrick Lauer2013-11-134-28/+12
| | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64
* sci-biology/vaal: Drop x86 as upstream gives no support and types are not ↵Justin Lecher2013-11-126-21/+36
| | | | | | | easily fixable, #458488, #472088 & #488550 Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Fix tarball and ist checksum, #490360Justin Lecher2013-11-062-17/+20
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/psipred: Version BUmpJustin Lecher2013-11-054-12/+86
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BUmpJustin Lecher2013-11-023-16/+69
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Marked stable on AMD64 based on arch testing by Elijah "Armageddon" El ↵Tony Vroon2013-10-243-5/+19
| | | | | | | Lazkani in bug #488414. Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB5058F9A
* sci-biology/rebase: Version BumpJustin Lecher2013-10-083-7/+70
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* flower version bumpHeather Cynede2013-09-223-12/+41
| | | | Package-Manager: portage-2.2.6/cvs/Linux x86_64
* sci-biology/samtools: Version BUmp, #485450Justin Lecher2013-09-204-6/+269
| | | | | Package-Manager: portage-2.2.6/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/bowtie: Fix location of html files, #484620Justin Lecher2013-09-183-19/+22
| | | | | Package-Manager: portage-2.2.6/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/biopython: Version BumpJustin Lecher2013-09-173-6/+69
| | | | | Package-Manager: portage-2.2.6/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/bamtools: Version Bump, drop old, #482636; thanks Martin ↵Justin Lecher2013-09-174-11/+51
| | | | | | | Mokrejš for the patch Package-Manager: portage-2.2.6/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* NMU: Fix whitespace.Manuel Rüger2013-09-143-5/+8
| | | | Package-Manager: portage-2.2.4/cvs/Linux x86_64
* NMU: Version bump. Migrate to ruby-ng eclass. Cleanup old. See bug #475310.Manuel Rüger2013-09-147-98/+71
| | | | Package-Manager: portage-2.2.4/cvs/Linux x86_64
* Analyze 454 flowgrams (.SFF files) (requested by Martin MOKREJŠ).Sergei Trofimovich2013-09-123-1/+70
| | | | | Package-Manager: portage-2.2.1_p20/cvs/Linux x86_64 Manifest-Sign-Key: 0x611FF3AA
* Analyze 454 flowgrams (.SFF files) (requested by Martin MOKREJŠ).Sergei Trofimovich2013-09-122-0/+12
| | | | | Package-Manager: portage-2.2.1_p20/cvs/Linux x86_64 Manifest-Sign-Key: 0x611FF3AA
* Clean up PYTHON_COMPAT from old implementations.Michał Górny2013-09-056-21/+50
| | | | | Package-Manager: portage-2.2.1/cvs/Linux x86_64 Manifest-Sign-Key: 0xEFB4464E!
* Update e-mail address.Jeroen Roovers2013-08-273-20/+11
| | | | | Package-Manager: portage-2.2.1/cvs/Linux x86_64 Manifest-Sign-Key: 0xA792A613
* sci-biology/abyss: Version BUmp, respect AR, #477580Justin Lecher2013-08-118-22/+139
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/last: Drop oldJustin Lecher2013-08-116-165/+19
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/maqview: Drop oldJustin Lecher2013-08-114-79/+19
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/bowtie: Drop oldJustin Lecher2013-08-115-129/+19
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/abyss: Drop oldJustin Lecher2013-08-115-122/+19
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for x86, wrt bug #477140Agostino Sarubbo2013-08-073-14/+22
| | | | | | Package-Manager: portage-2.1.12.2/cvs/Linux ppc64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for amd64 wrt bug #477140José María Alonso2013-07-283-20/+17
| | | | | Package-Manager: portage-2.1.12.2/cvs/Linux x86_64 Manifest-Sign-Key: 0xD628E536
* Stable for x86, wrt bug #477144Agostino Sarubbo2013-07-273-18/+21
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #477134Agostino Sarubbo2013-07-273-18/+21
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #477186Agostino Sarubbo2013-07-273-18/+21
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #477144Agostino Sarubbo2013-07-213-21/+23
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #477134Agostino Sarubbo2013-07-213-20/+22
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #477186Agostino Sarubbo2013-07-213-11/+23
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* sci-biology/mafft: Keyword for ~-linuxJustin Lecher2013-07-193-8/+21
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/allpathslg: Version BumpJustin Lecher2013-07-174-10/+64
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/last: Version BumpJustin Lecher2013-07-173-8/+75
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/abyss: Moved to autotools-utils.eclassJustin Lecher2013-07-173-17/+35
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/seqan: Add missing depJustin Lecher2013-07-173-8/+22
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/bowtie: Version BumpJustin Lecher2013-07-173-8/+67
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/allpaths: Bump to EAPI=5Justin Lecher2013-07-173-13/+26
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/mira: Version BUmp; fixed compilation with dev-libs/boost-1.53.0 ↵Justin Lecher2013-07-073-12/+81
| | | | | | | and some libtool versions, #450322; thanks Martin Mokrejs for all his work Package-Manager: portage-2.2.0_alpha186/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916