diff options
Diffstat (limited to 'app-sci')
| -rw-r--r-- | app-sci/cutg/ChangeLog | 10 | ||||
| -rw-r--r-- | app-sci/cutg/cutg-141.0.ebuild | 4 | ||||
| -rw-r--r-- | app-sci/cutg/cutg-142.ebuild | 39 | ||||
| -rw-r--r-- | app-sci/cutg/files/digest-cutg-142 | 1 |
4 files changed, 51 insertions, 3 deletions
diff --git a/app-sci/cutg/ChangeLog b/app-sci/cutg/ChangeLog index 06285cd45aa6..a093733b19ad 100644 --- a/app-sci/cutg/ChangeLog +++ b/app-sci/cutg/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for app-sci/cutg # Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/ChangeLog,v 1.3 2004/07/09 21:42:18 mr_bones_ Exp $ +# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/ChangeLog,v 1.4 2004/08/11 00:03:23 ribosome Exp $ + +*cutg-142 (10 Aug 2004) + + 10 Aug 2004; Olivier Fisette <ribosome@gentoo.org> + cutg-141.0.ebuild: + Added to x86. + cutg-142.ebuild: + Updated package. 26 Jun 2004; David Holm <dholm@gentoo.org> cutg-141.0.ebuild: Added to ~ppc. diff --git a/app-sci/cutg/cutg-141.0.ebuild b/app-sci/cutg/cutg-141.0.ebuild index 4af009836bbd..16e9897e5902 100644 --- a/app-sci/cutg/cutg-141.0.ebuild +++ b/app-sci/cutg/cutg-141.0.ebuild @@ -1,13 +1,13 @@ # Copyright 1999-2004 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/cutg-141.0.ebuild,v 1.3 2004/07/09 21:42:18 mr_bones_ Exp $ +# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/cutg-141.0.ebuild,v 1.4 2004/08/11 00:03:23 ribosome Exp $ DESCRIPTION="Codon usage tables calculated from GenBank" HOMEPAGE="http://www.kazusa.or.jp/codon/" SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.141.tar.gz" LICENSE="public-domain" SLOT="0" -KEYWORDS="~x86 ~ppc" +KEYWORDS="x86 ~ppc" IUSE="no-emboss no-rawdb" S=${WORKDIR} diff --git a/app-sci/cutg/cutg-142.ebuild b/app-sci/cutg/cutg-142.ebuild new file mode 100644 index 000000000000..6cff385aff4c --- /dev/null +++ b/app-sci/cutg/cutg-142.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/cutg-142.ebuild,v 1.1 2004/08/11 00:03:23 ribosome Exp $ + +DESCRIPTION="Codon usage tables calculated from GenBank" +HOMEPAGE="http://www.kazusa.or.jp/codon/" +SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz" +LICENSE="public-domain" +SLOT="0" +KEYWORDS="~x86 ~ppc" +IUSE="no-emboss no-rawdb" + +S=${WORKDIR} + +src_compile() { + # Index the database for use with emboss if emboss is installed and + # the user did not explicitly request not to index the database. + if [ -e /usr/bin/cutgextract ] && ! use no-emboss; then + mkdir CODONS + einfo "Indexing CUTG for usage with EMBOSS." + EMBOSS_DATA=. cutgextract -auto -directory ${S} || die \ + "Indexing CUTG failed." + fi +} + +src_install() { + if ! use no-rawdb; then + insinto /usr/share/${PN} + doins *.codon *.spsum + fi + dodoc README + if [ -e /usr/bin/cutgextract ] && ! use no-emboss; then + insinto /usr/share/EMBOSS/data/CODONS + cd CODONS + for file in *; do + doins ${file} + done + fi +} diff --git a/app-sci/cutg/files/digest-cutg-142 b/app-sci/cutg/files/digest-cutg-142 new file mode 100644 index 000000000000..fc0adb7d7352 --- /dev/null +++ b/app-sci/cutg/files/digest-cutg-142 @@ -0,0 +1 @@ +MD5 548fa77024376e43c0642d56834419d9 CUTG.142.tar.gz 109384973 |