From 333ecd2b5e8b4e4c92634af94ac075e59299dd53 Mon Sep 17 00:00:00 2001
From: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Mon, 18 Jan 2021 16:16:35 +0100
Subject: sci-biology/subread: version bump 2.0.1, fix fetch

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
---
 sci-biology/subread/Manifest             |  2 +-
 sci-biology/subread/subread-1.4.6.ebuild | 41 --------------------------------
 sci-biology/subread/subread-2.0.1.ebuild | 40 +++++++++++++++++++++++++++++++
 3 files changed, 41 insertions(+), 42 deletions(-)
 delete mode 100644 sci-biology/subread/subread-1.4.6.ebuild
 create mode 100644 sci-biology/subread/subread-2.0.1.ebuild

(limited to 'sci-biology/subread')

diff --git a/sci-biology/subread/Manifest b/sci-biology/subread/Manifest
index dc31ef636..48a9f7ca3 100644
--- a/sci-biology/subread/Manifest
+++ b/sci-biology/subread/Manifest
@@ -1 +1 @@
-DIST subread-1.4.6-source.tar.gz 20173034 BLAKE2B 28bac4ae6b2aad2b765f2849f18dd9cfc9dbe8541b5c05943f313c01fc7b5ed5dcf10e6ed6bdb4738814b86a5273dc1a55d23638c47cc407c76de45110ff8813 SHA512 48636244d814ac985ba7ca2d1e54882b59c47145392958faab5680104ec2b35c7106d6351dfac675bfb5c5b8372e43585c603f76d830e3ddb25b6747a28b0132
+DIST subread-2.0.1-source.tar.gz 23260381 BLAKE2B 498f898c9b5f5e0819fb7ae0a1407805fb3dc34cf5a07b4354d1493315a9e9190735916fb5c5587f972a67a7d47880e31dc3cc627e271dd2e452e856f5fd79c1 SHA512 e7548c426f75a5705a7c0538787007c5d3f23e4a4561022f192b3219f333483a02312986936cbbfcc8f9afa24cb4d91a1cc62fbebb6c6aef957568d5d8fa3505
diff --git a/sci-biology/subread/subread-1.4.6.ebuild b/sci-biology/subread/subread-1.4.6.ebuild
deleted file mode 100644
index aa8290e1a..000000000
--- a/sci-biology/subread/subread-1.4.6.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-[ "$PV" == "9999" ] && inherit subversion
-
-DESCRIPTION="NGS suite for analysis of mapped reads, summary of exon/intron/gene counts"
-HOMEPAGE="http://bioinf.wehi.edu.au/featureCounts/" # no https
-if [ "$PV" == "9999" ]; then
-	ESVN_REPO_URI="https://subread.svn.sourceforge.net/svnroot/subread/trunk"
-	#KEYWORDS="~amd64 ~x86"
-else
-	SRC_URI="https://sourceforge.net/projects/subread/files/"${P}"/"${P}"-source.tar.gz"
-	KEYWORDS="~amd64 ~x86"
-fi
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-
-DEPEND="sys-libs/zlib"
-RDEPEND="${DEPEND}"
-
-S="${S}"-source
-
-src_prepare(){
-	sed -e "s/-mtune=core2//g" -e "s/-O9//g" -i src/Makefile.Linux || die
-}
-
-src_compile(){
-	cd src || die
-	emake -f Makefile.Linux
-}
-
-src_install(){
-	dobin bin/[a-s]* bin/utilities/*
-	dodoc README.txt doc/SubreadUsersGuide.pdf
-	insinto  /usr/share/subread
-	doins annotation/*.txt
-}
diff --git a/sci-biology/subread/subread-2.0.1.ebuild b/sci-biology/subread/subread-2.0.1.ebuild
new file mode 100644
index 000000000..18f11e5a6
--- /dev/null
+++ b/sci-biology/subread/subread-2.0.1.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DESCRIPTION="NGS suite for analysis of mapped reads, summary of exon/intron/gene counts"
+HOMEPAGE="http://bioinf.wehi.edu.au/featureCounts/" # no https
+if [ "$PV" == "9999" ]; then
+	inherit subversion
+	ESVN_REPO_URI="https://subread.svn.sourceforge.net/svnroot/subread/trunk"
+	KEYWORDS=""
+else
+	SRC_URI="https://sourceforge.net/projects/subread/files/${P}/${P}-source.tar.gz"
+	KEYWORDS=""
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+
+DEPEND="sys-libs/zlib"
+RDEPEND="${DEPEND}"
+
+S="${S}"-source
+
+src_prepare(){
+	default
+	sed -e "s/-mtune=core2//g" -e "s/-O9//g" -i src/Makefile.Linux || die
+}
+
+src_compile(){
+	cd src || die
+	emake -f Makefile.Linux
+}
+
+src_install(){
+	dobin bin/[a-s]* bin/utilities/*
+	dodoc README.txt doc/SubreadUsersGuide.pdf
+	insinto  /usr/share/subread
+	doins annotation/*.txt
+}
-- 
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