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# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2.ebuild,v 1.11 2012/03/07 19:33:39 jlec Exp $
EAPI=3
PYTHON_DEPEND="2"
inherit autotools base eutils flag-o-matic python toolchain-funcs versionator
MY_S2_PV=$(replace_version_separator 2 - ${PV})
MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
MY_S_P=${MY_S2_P}-${PR/r/revision-}
MY_PV=${PV}
MY_P=${PN}-${MY_PV}
DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
HOMEPAGE="http://www.biop.ox.ac.uk/coot/"
SRC_URI="
http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz
test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
SLOT="0"
LICENSE="GPL-3"
KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
IUSE="+openmp test"
SCIDEPS="
>=sci-libs/ccp4-libs-6.1
>=sci-libs/clipper-20090520
>=sci-libs/coot-data-2
>=sci-libs/gsl-1.3
>=sci-libs/mmdb-1.23
sci-libs/ssm
<sci-libs/monomer-db-1
sci-chemistry/reduce
<sci-chemistry/refmac-5.6
sci-chemistry/probe"
XDEPS="
gnome-base/libgnomecanvas
gnome-base/librsvg:2
media-libs/libpng
media-libs/freeglut
x11-libs/gtk+:2
x11-libs/gtkglext"
SCHEMEDEPS="
dev-scheme/net-http
dev-scheme/guile-gui
>=dev-scheme/guile-lib-0.1.6
dev-scheme/guile-www
>=x11-libs/guile-gtk-2.1"
RDEPEND="
${SCIDEPS}
${XDEPS}
${SCHEMEDEPS}
dev-python/pygtk:2
>=dev-libs/gmp-4.2.2-r2
>=net-misc/curl-7.19.6
net-dns/libidn"
DEPEND="${RDEPEND}
dev-lang/swig
sys-devel/bc
test? ( dev-scheme/greg )"
S="${WORKDIR}/${MY_P}"
pkg_setup() {
if use openmp; then
tc-has-openmp || die "Please use an OPENMP capable compiler"
has_version '<sys-devel/libtool-2.4-r2' && append-ldflags $(no-as-needed)
fi
python_set_active_version 2
}
PATCHES=(
"${FILESDIR}"/${PV}-clipper-config.patch
"${FILESDIR}"/${PV}-mmdb-config.patch
"${FILESDIR}"/${PV}-gl.patch
"${FILESDIR}"/${PV}-test.patch
"${FILESDIR}"/${PV}-ssm.patch
"${FILESDIR}"/${PV}-libpng15.patch
)
src_prepare() {
sed \
-e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
-i configure.in || die
base_src_prepare
eautoreconf
}
src_configure() {
# All the --with's are used to activate various parts.
# Yes, this is broken behavior.
econf \
--includedir='${prefix}/include/coot' \
--with-gtkcanvas-prefix="${EPREFIX}/usr" \
--with-gtkgl-prefix="${EPREFIX}/usr" \
--with-guile \
--with-python="${EPREFIX}/usr" \
--with-guile-gtk \
--with-gtk2 \
--with-pygtk \
$(use_enable openmp)
}
src_compile() {
emake || die "emake failed"
python_convert_shebangs $(python_get_version) src/coot_gtk2.py
cp "${S}"/src/coot_gtk2.py python/coot.py || die
}
src_test() {
source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
mkdir "${T}"/coot_test
export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
export COOT_SCHEME_DIR="${S}/scheme/"
export COOT_RESOURCES_FILE="${S}/cootrc"
export COOT_PIXMAPS_DIR="${S}/pixmaps"
export COOT_DATA_DIR="${S}"
export COOT_PYTHON_DIR="${S}/python"
export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
export PYTHONHOME="${EPREFIX}"/usr
export CCP4_SCR="${T}"/coot_test
export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
export SYMINFO="${S}/syminfo.lib"
export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data
cat > command-line-greg.scm <<- EOF
(use-modules (ice-9 greg))
(set! greg-tools (list "greg-tests"))
(set! greg-debug #t)
(set! greg-verbose 5)
(let ((r (greg-test-run)))
(if r
(coot-real-exit 0)
(coot-real-exit 1)))
EOF
einfo "Running test with following paths ..."
einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
einfo "COOT_DATA_DIR $COOT_DATA_DIR"
einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
einfo "PYTHONPATH $PYTHONPATH"
einfo "PYTHONHOME $PYTHONHOME"
einfo "CCP4_SCR ${CCP4_SCR}"
einfo "CLIBD_MON ${CLIBD_MON}"
einfo "SYMINFO ${SYMINFO}"
"${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
"${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die
}
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