# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.004-r2.ebuild,v 1.3 2011/08/01 19:27:59 maekke Exp $ EAPI=3 inherit eutils toolchain-funcs multilib prefix MY_P="${PN}-v${PV}-prod-src" DESCRIPTION="Tools for extracting mmCIF data from structure determination applications" HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html" SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz" LICENSE="PDB" SLOT="0" KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux" IUSE="" RDEPEND="!<app-text/html-xml-utils-5.3" DEPEND="${RDEPEND} >=sci-libs/cifparse-obj-7.025" S="${WORKDIR}/${MY_P}" src_prepare() { epatch \ "${FILESDIR}"/${P}-cflags-install.patch \ "${FILESDIR}"/${P}-gcc-4.3.patch \ "${FILESDIR}"/${P}-Makefile.patch \ "${FILESDIR}"/${P}-env.patch sed -i "s:GENTOOLIBDIR:$(get_libdir):g" \ pdb-extract-v3.0/Makefile \ || die "Failed to fix libdir" # Get rid of unneeded directories, to make sure we use system files ebegin "Deleting redundant directories" rm -rf cif-file-v1.0 cifobj-common-v4.1 cifparse-obj-v7.0 \ misclib-v2.2 regex-v2.2 tables-v8.0 eend sed -i \ -e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \ -e "s:^\(CC=\).*:\1$(tc-getCC):g" \ -e "s:^\(GINCLUDES=\).*:\1-I${EPREFIX}/usr/include/cifparse-obj:g" \ -e "s:^\(LIBDIR=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \ "${S}"/etc/make.* \ || die "Failed to fix makefiles" eprefixify pdb-extract-v3.0/Makefile etc/* } src_install() { exeinto /usr/libexec/ccp4/bin doexe bin/pdb_extract{,_sf} bin/extract \ || die "failed to install binaries" insinto /usr/include/rcsb doins include/* || die "failed to install include files" dodoc README* || die "failed to install docs" insinto /usr/share/rcsb/ doins -r pdb-extract-data || die "failed to install data files" cat >> "${T}"/envd <<- EOF PDB_EXTRACT="${EPREFIX}/usr/share/rcsb/" PDB_EXTRACT_ROOT="${EPREFIX}/usr/" EOF newenvd "${T}"/envd 20pdb-extract \ || die "failed to install env files" }