# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.ebuild,v 1.7 2010/09/16 17:24:03 scarabeus Exp $ EAPI="3" PYTHON_DEPEND="2" inherit autotools base python versionator MY_S2_PV=$(replace_version_separator 2 - ${PV}) MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1} MY_S_P=${MY_S2_P}-${PR/r/revision-} MY_PV=${PV} MY_P=${PN}-${MY_PV} DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation" HOMEPAGE="http://www.biop.ox.ac.uk/coot/" SRC_URI=" http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz test? ( mirror://gentoo/greg-data-${PV}.tar.gz )" SLOT="0" LICENSE="GPL-3" KEYWORDS="~amd64 ~x86" IUSE="test" SCIDEPS=" >=sci-libs/ccp4-libs-6.1 >=sci-libs/clipper-20090520 >=sci-libs/coot-data-2 >=sci-libs/gsl-1.3 sci-libs/mmdb sci-chemistry/reduce sci-chemistry/refmac sci-chemistry/probe" XDEPS=" gnome-base/libgnomecanvas gnome-base/librsvg media-libs/libpng media-libs/freeglut >=x11-libs/gtk+-2.2 x11-libs/gtkglext" SCHEMEDEPS=" dev-scheme/net-http dev-scheme/guile-gui >=dev-scheme/guile-lib-0.1.6 dev-scheme/guile-www =x11-libs/guile-gtk-2.1" RDEPEND=" ${SCIDEPS} ${XDEPS} ${SCHEMEDEPS} dev-python/pygtk >=dev-libs/gmp-4.2.2-r2 >=net-misc/curl-7.19.6 net-dns/libidn" DEPEND="${RDEPEND} dev-lang/swig test? ( dev-scheme/greg )" #S="${WORKDIR}/${MY_P}" S="${WORKDIR}/${MY_S2_P}" pkg_setup() { python_set_active_version 2 } src_prepare() { base_src_prepare # Link against single-precision fftw sed -i \ -e "s:lfftw:lsfftw:g" \ -e "s:lrfftw:lsrfftw:g" \ "${S}"/macros/clipper.m4 # So we don't need to depend on crazy old gtk and friends cp "${FILESDIR}"/*.m4 "${S}"/macros/ eautoreconf } src_configure() { # All the --with's are used to activate various parts. # Yes, this is broken behavior. econf \ --includedir='${prefix}/include/coot' \ --with-gtkcanvas-prefix="${EPREFIX}"/usr \ --with-clipper-prefix="${EPREFIX}"/usr \ --with-mmdb-prefix="${EPREFIX}"/usr \ --with-ssmlib-prefix="${EPREFIX}"/usr \ --with-gtkgl-prefix="${EPREFIX}"/usr \ --with-guile \ --with-python="${EPREFIX}"/usr \ --with-guile-gtk \ --with-gtk2 \ --with-pygtk } src_compile() { emake || die "emake failed" python_convert_shebangs $(python_get_version) src/coot_gtk2.py cp "${S}"/src/coot_gtk2.py python/coot.py || die } src_test() { mkdir "${T}"/coot_test export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb" export COOT_SCHEME_DIR="${S}/scheme/" export COOT_RESOURCES_FILE="${S}/cootrc" export COOT_PIXMAPS_DIR="${S}/pixmaps" export COOT_DATA_DIR="${S}" export COOT_PYTHON_DIR="${S}/python" export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}" export PYTHONHOME="${EPREFIX}"/usr export CCP4_SCR="${T}"/coot_test export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/" export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data cat > command-line-greg.scm <<- EOF (use-modules (ice-9 greg)) (set! greg-tools (list "greg-tests")) (set! greg-debug #t) (set! greg-verbose 5) (let ((r (greg-test-run))) (if r (coot-real-exit 0) (coot-real-exit 1))) EOF einfo "Running test with following paths ..." einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES" einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR" einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE" einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR" einfo "COOT_DATA_DIR $COOT_DATA_DIR" einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR" einfo "PYTHONPATH $PYTHONPATH" einfo "PYTHONHOME $PYTHONHOME" einfo "CCP4_SCR ${CCP4_SCR}" einfo "CLIBD_MON ${CLIBD_MON}" "${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die }