From 9d56ae0caa7a7ceef65a940549b8aaab3361eea4 Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <weaver@gentoo.org>
Date: Mon, 20 Apr 2009 17:40:44 +0000
Subject: Version bump (Portage version: 2.2_rc30/cvs/Linux x86_64)

---
 sci-biology/bwa/ChangeLog        |  8 +++++++-
 sci-biology/bwa/bwa-0.4.5.ebuild | 26 --------------------------
 sci-biology/bwa/bwa-0.4.6.ebuild | 29 +++++++++++++++++++++++++++++
 3 files changed, 36 insertions(+), 27 deletions(-)
 delete mode 100644 sci-biology/bwa/bwa-0.4.5.ebuild
 create mode 100644 sci-biology/bwa/bwa-0.4.6.ebuild

(limited to 'sci-biology')

diff --git a/sci-biology/bwa/ChangeLog b/sci-biology/bwa/ChangeLog
index c9672024fce0..93387241c233 100644
--- a/sci-biology/bwa/ChangeLog
+++ b/sci-biology/bwa/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/bwa
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.1 2009/02/26 22:11:27 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.2 2009/04/20 17:40:44 weaver Exp $
+
+*bwa-0.4.6 (20 Apr 2009)
+
+  20 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> -bwa-0.4.5.ebuild,
+  +bwa-0.4.6.ebuild:
+  Version bump
 
 *bwa-0.4.5 (26 Feb 2009)
 
diff --git a/sci-biology/bwa/bwa-0.4.5.ebuild b/sci-biology/bwa/bwa-0.4.5.ebuild
deleted file mode 100644
index f9ba31046a8e..000000000000
--- a/sci-biology/bwa/bwa-0.4.5.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.4.5.ebuild,v 1.1 2009/02/26 22:11:27 weaver Exp $
-
-DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
-HOMEPAGE="http://maq.sourceforge.net/"
-SRC_URI="mirror://sourceforge/maq/${P}.tar.bz2"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND=""
-
-src_unpack() {
-	unpack ${A}
-	sed -i 's/^CFLAGS=/CFLAGS+=/' "${S}/Makefile"
-}
-
-src_install() {
-	dobin bwa || die
-	doman bwa.1 || die
-	dodoc ChangeLog NEWS
-}
diff --git a/sci-biology/bwa/bwa-0.4.6.ebuild b/sci-biology/bwa/bwa-0.4.6.ebuild
new file mode 100644
index 000000000000..22872001f42f
--- /dev/null
+++ b/sci-biology/bwa/bwa-0.4.6.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.4.6.ebuild,v 1.1 2009/04/20 17:40:44 weaver Exp $
+
+EAPI=2
+
+DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
+HOMEPAGE="http://maq.sourceforge.net/"
+SRC_URI="mirror://sourceforge/maq/${P}.tar.bz2"
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND=""
+
+src_prepare() {
+	sed -i 's/^CFLAGS=/CFLAGS+=/' "${S}/Makefile"
+}
+
+src_install() {
+	dobin bwa || die
+	doman bwa.1 || die
+	exeinto /usr/share/${PN}
+	doexe solid2fastq.pl || die
+	dodoc ChangeLog NEWS
+}
-- 
cgit v1.2.3-65-gdbad