From 2c4c1211426a2d068f7b90804a5c6437c0591e4c Mon Sep 17 00:00:00 2001 From: Justin Lecher Date: Thu, 26 Apr 2012 16:35:43 +0000 Subject: sci-biology/emboss: Drop old (Portage version: 2.2.0_alpha101/cvs/Linux x86_64) --- sci-biology/emboss/ChangeLog | 7 ++- sci-biology/emboss/emboss-6.1.0.ebuild | 109 --------------------------------- 2 files changed, 5 insertions(+), 111 deletions(-) delete mode 100644 sci-biology/emboss/emboss-6.1.0.ebuild (limited to 'sci-biology') diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog index fcf6d0203801..fd0dd9332695 100644 --- a/sci-biology/emboss/ChangeLog +++ b/sci-biology/emboss/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/emboss -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.66 2011/10/20 08:46:56 xarthisius Exp $ +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.67 2012/04/26 16:35:43 jlec Exp $ + + 26 Apr 2012; Justin Lecher -emboss-6.1.0.ebuild: + Drop old 20 Oct 2011; Kacper Kowalik emboss-6.3.1_p4.ebuild, emboss-6.1.0.ebuild, emboss-6.1.0-r1.ebuild, emboss-6.0.1.ebuild: diff --git a/sci-biology/emboss/emboss-6.1.0.ebuild b/sci-biology/emboss/emboss-6.1.0.ebuild deleted file mode 100644 index 012f5c43628a..000000000000 --- a/sci-biology/emboss/emboss-6.1.0.ebuild +++ /dev/null @@ -1,109 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-6.1.0.ebuild,v 1.7 2011/10/20 08:46:56 xarthisius Exp $ - -inherit eutils - -DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package" -HOMEPAGE="http://emboss.sourceforge.net/" -SRC_URI="ftp://${PN}.open-bio.org/pub/EMBOSS/old/${PV}/EMBOSS-${PV}.tar.gz" -LICENSE="GPL-2 LGPL-2" - -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86" -IUSE="X png minimal" - -DEPEND="X? ( x11-libs/libXt ) - png? ( - sys-libs/zlib - media-libs/libpng - media-libs/gd - ) - !minimal? ( - sci-biology/primer3 - sci-biology/clustalw - )" - -RDEPEND="${DEPEND} - !sys-devel/cons" - -PDEPEND="!minimal? ( - sci-biology/aaindex - sci-biology/cutg - sci-biology/prints - sci-biology/prosite - >=sci-biology/rebase-707 - sci-biology/transfac - )" - -S="${WORKDIR}/EMBOSS-${PV}" - -src_unpack() { - unpack ${A} - cd "${S}" - epatch "${FILESDIR}"/${PN}-5.0.0-as-needed.patch - - local link_string="-lX11"; - if use png; then - link_string="${link_string} -lgd -lpng" - fi - sed -e "s:PATCH_PLPLOT:${link_string}:" -i plplot/Makefile.in \ - || die "Failed to patch ajax Makefile" -} - -src_compile() { - EXTRA_CONF="--includedir=${D}/usr/include/emboss" - ! use X && EXTRA_CONF="${EXTRA_CONF} --without-x" - ! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver" - - econf ${EXTRA_CONF} || die - # Do not install the JEMBOSS component (the --without-java configure option - # does not work). JEMBOSS will eventually be available as a separate package. - sed -i -e "s/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/" \ - Makefile || die - emake || die -} - -src_install() { - einstall || die "Failed to install program files." - - dodoc AUTHORS ChangeLog FAQ NEWS README THANKS \ - || die "Failed to install documentation." - newdoc "${FILESDIR}"/${PN}-README.Gentoo-1 README.Gentoo \ - || die "Failed to install Gentoo readme file." - - # Install env file for setting libplplot and acd files path. - cat <<- EOF > 22emboss - # plplot libs dir - PLPLOT_LIB="/usr/share/EMBOSS/" - # ACD files location - EMBOSS_ACDROOT="/usr/share/EMBOSS/acd" - EOF - doenvd 22emboss || die "Failed to install environment file." - - # Symlink preinstalled docs to "/usr/share/doc". - dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals || die - dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs || die - dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials || die - dosym /usr/share/EMBOSS/doc/html /usr/share/doc/${PF}/html || die - - # Remove frestdist documentation conflicting with the EMBASSY philypnew - # package. - rm "${D}"/usr/share/EMBOSS/doc/programs/text/frestdist.txt || \ - die "Failed to remove duplicated documentation." - - # Remove useless dummy files from the image. - find emboss/data -name dummyfile -delete || die "Failed to remove dummy files." - - # Move the provided codon files to a different directory. This will avoid - # user confusion and file collisions on case-insensitive file systems (see - # bug #115446). This change is documented in "README.Gentoo". - mv "${D}"/usr/share/EMBOSS/data/CODONS{,.orig} || \ - die "Failed to move CODON directory." - - # Move the provided restriction enzyme prototypes file to a different name. - # This avoids file collisions with versions of rebase that install their - # own enzyme prototypes file (see bug #118832). - mv "${D}"/usr/share/EMBOSS/data/embossre.equ{,.orig} || \ - die "Failed to move enzyme equivalence file." -} -- cgit v1.2.3-65-gdbad