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* sci-biology/mira: Version BUmp; fixed compilation with dev-libs/boost-1.53.0 ↵Justin Lecher2013-07-071-11/+3
| | | | | | and some libtool versions, #450322; thanks Martin Mokrejs for all his work (Portage version: 2.2.0_alpha186/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mira: Version BUmp; fixed compilation with dev-libs/boost-1.53.0 ↵Justin Lecher2013-07-072-1/+78
| | | | | | and some libtool versions, #450322; thanks Martin Mokrejs for all his work (Portage version: 2.2.0_alpha186/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Drop old; Bump versionJustin Lecher2013-07-031-22/+6
| | | | (Portage version: 2.2.0_alpha186/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Drop old; Bump versionJustin Lecher2013-07-0310-412/+10
| | | | (Portage version: 2.2.0_alpha186/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/biopython: Fix deps for pythonJustin Lecher2013-07-021-5/+5
| | | | (Portage version: 2.2.0_alpha186/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/biopython: Fix deps for pythonJustin Lecher2013-07-022-9/+8
| | | | (Portage version: 2.2.0_alpha186/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-06-241-4/+6
| | | | (Portage version: 2.2.0_alpha184/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-06-242-1/+67
| | | | (Portage version: 2.2.0_alpha184/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* herd is now sci-biologySebastien Fabbro2013-06-191-8/+7
| | | | (Portage version: 2.2.01.22013-prefix/cvs/Linux x86_64, signed Manifest commit with key 0x13CB1360)
* herd is now sci-biologySebastien Fabbro2013-06-192-7/+9
| | | | (Portage version: 2.2.01.22013-prefix/cvs/Linux x86_64, signed Manifest commit with key 0x13CB1360)
* herd is now sci-biologySebastien Fabbro2013-06-191-6/+6
| | | | (Portage version: 2.2.01.22013-prefix/cvs/Linux x86_64, signed Manifest commit with key 0x13CB1360)
* herd is now sci-biologySebastien Fabbro2013-06-192-7/+9
| | | | (Portage version: 2.2.01.22013-prefix/cvs/Linux x86_64, signed Manifest commit with key 0x13CB1360)
* sci-biology/sibsim4: Drop maintainerJustin Lecher2013-06-181-7/+7
| | | | (Portage version: 2.2.0_alpha180/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/sibsim4: Drop maintainerJustin Lecher2013-06-182-5/+4
| | | | (Portage version: 2.2.0_alpha180/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: version BumpJustin Lecher2013-06-121-4/+6
| | | | (Portage version: 2.2.0_alpha179/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: version BumpJustin Lecher2013-06-122-1/+67
| | | | (Portage version: 2.2.0_alpha179/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/ncbi-tools: Fix for prefixJustin Lecher2013-06-121-8/+8
| | | | (Portage version: 2.2.0_alpha179/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/ncbi-tools: Fix for prefixJustin Lecher2013-06-123-4/+9
| | | | (Portage version: 2.2.0_alpha179/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/biopython: Keyword ~-linuxJustin Lecher2013-06-061-6/+6
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/biopython: Keyword ~-linuxJustin Lecher2013-06-062-3/+6
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Update to new upstream tarballJustin Lecher2013-06-061-7/+7
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Update to new upstream tarballJustin Lecher2013-06-061-1/+4
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-06-061-4/+6
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-06-062-1/+67
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vaal: Version BUmpJustin Lecher2013-06-021-6/+8
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vaal: Version BUmpJustin Lecher2013-06-022-1/+48
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-291-7/+7
| | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-292-3/+10
| | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vienna-rna: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-291-6/+6
| | | | | | PYTHON_REQUIRED_USE) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vienna-rna: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-292-2/+7
| | | | | | PYTHON_REQUIRED_USE) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/seqan: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-291-6/+6
| | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/seqan: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-292-3/+9
| | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Use append-cppflags for preprocessor flagsJustin Lecher2013-05-261-5/+5
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Use append-cppflags for preprocessor flagsJustin Lecher2013-05-262-3/+6
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version Bump, add test functionJustin Lecher2013-05-261-5/+7
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version Bump, add test functionJustin Lecher2013-05-263-2/+86
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BUmp, drop unnecessary dieJustin Lecher2013-05-211-6/+8
| | | | (Portage version: 2.2.0_alpha176/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BUmp, drop unnecessary dieJustin Lecher2013-05-213-7/+56
| | | | (Portage version: 2.2.0_alpha176/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* showing special permission during pkg_setup so that we 'display this notice.'Ian Stakenvicius2013-05-131-5/+5
| | | | (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* showing special permission during pkg_setup so that we 'display this notice.'Ian Stakenvicius2013-05-132-2/+8
| | | | (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* put back mirror restriction (was too excited about dropping fetch, forgot to ↵Ian Stakenvicius2013-05-131-5/+5
| | | | | | re-add) (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* put back mirror restriction (was too excited about dropping fetch, forgot to ↵Ian Stakenvicius2013-05-132-3/+7
| | | | | | re-add) (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* Dropped fetch restriction and amended license, as Gentoo has been granted ↵Ian Stakenvicius2013-05-131-5/+5
| | | | | | special permissions (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* Dropped fetch restriction and amended license, as Gentoo has been granted ↵Ian Stakenvicius2013-05-132-4/+8
| | | | | | special permissions (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* sci-biology/fasta: Version BUmpJustin Lecher2013-05-111-4/+7
| | | | (Portage version: 2.2.0_alpha174/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/fasta: Version BUmpJustin Lecher2013-05-113-2/+161
| | | | (Portage version: 2.2.0_alpha174/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Fix USE=threads make flag magicJustin Lecher2013-04-291-5/+5
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Fix USE=threads make flag magicJustin Lecher2013-04-292-3/+6
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-04-291-14/+17
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-04-294-3/+271
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)